PDB entry 2wwa

View 2wwa on RCSB PDB site
Description: cryo-em structure of idle yeast ssh1 complex bound to the yeast 80s ribosome
Deposited on 2009-10-22, released 2009-12-08
The last revision was dated 2018-10-03, with a file datestamp of 2018-09-28.
Experiment type: EM
Resolution: 8.9 Å
R-factor: N/A
AEROSPACI score: -0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: sec sixty-one protein homolog
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: protein transport protein sss1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: protein transport protein seb2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 25s rRNA
    Species: Saccharomyces cerevisiae [TaxId:4932]
  • Chain 'E':
    Compound: 25s rRNA
    Species: Saccharomyces cerevisiae [TaxId:4932]
  • Chain 'F':
    Compound: 25s rRNA
    Species: Saccharomyces cerevisiae [TaxId:4932]
  • Chain 'G':
    Compound: 25s rRNA
    Species: Saccharomyces cerevisiae [TaxId:4932]
  • Chain 'H':
    Compound: 60S ribosomal protein L4-B
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 60S ribosomal protein L17-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 60S Ribosomal protein L19
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 60S ribosomal protein L25
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 60S ribosomal protein L26-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 60s ribosomal protein l31-a
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 60S Ribosomal protein L35
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 60S ribosomal protein L39
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >2wwaA (A:)
    msgfrlidivkpilpilpevelpfeklpfddkivytifagliylfaqfplvglpkattpn
    vndpiyflrgvfgceprtllefglfpnissglilqllaglkvikvnfkiqsdrelfqslt
    kvfaivqyviltnififagyfgddlsvvqiglinfqlvgagifttllaevidkgfgfssg
    amiintvviatnlvadtfgvsqikvgeddqteaqgalinliqglrskhktfiggiisafn
    rdylpnltttiivlaiaiivcylqsvrvelpirstrargtnnvypikllytgclsvlfsy
    tilfyihifafvliqlvaknepthiickimghyenannllavptfplsllapptsffkgv
    tqqpltfitysafilvtgiwfadkwqaisgssardvalefkdqgitlmgrreqnvakeln
    kvipiaavtgasvlslitvigeslglkgkaagivvgiaggfsllevitieyqqsggqsal
    nqvlgvpgam
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2wwaB (B:)
    marasekgeekkqsnnqveklveapvefvregtqflakckkpdlkeytkivkavgigfia
    vgiigyaiklihipiryviv
    

    Sequence, based on observed residues (ATOM records):
    >2wwaB (B:)
    lveapvefvregtqflakckkpdlkeytkivkavgigfiavgiigyaiklihipiryviv
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2wwaC (C:)
    maasvppggqrilqkrrqaqsikekqakqtptstrqagyggssssilklytdeangfrvd
    slvvlflsvgfifsvialhlltkfthi
    

    Sequence, based on observed residues (ATOM records):
    >2wwaC (C:)
    rvdslvvlflsvgfifsvial
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2wwaH (H:)
    msrpqvtvhsltgeatanalplpavfsapirpdivhtvftsvnknkrqayavsekaghqt
    saeswgtgravariprvggggtgrsgqgafgnmcrggrmfaptktwrkwnvkvnhnekry
    atasaiaatavaslvlarghrvekipeiplvvstdlesiqktkeavaalkavgahsdllk
    vlkskklragkgkyrnrrwtqrrgplvvyaedngivkalrnvpgvetanvaslnllqlap
    gahlgrfviwteaaftkldqvwgsetvasskvgytlpshiistsdvtriinsseiqsair
    pagqatqkrthvlkknplknkqvllrlnpyakvfaaeklgskkaektgtkpaavfaetlk
    hd
    

    Sequence, based on observed residues (ATOM records):
    >2wwaH (H:)
    msrpqvtvhsltgeatanalplpavfsapirpdivhtvftsvnknkrqayavsekaghqt
    saeswgtgravariprvggggtgrsgqgafgnmcrggrmfaptktwrkwnvkvnhnekry
    atasaiaatavaslvlarghrvekipeiplvvstdlesiqktkeavaalkavgahsdllk
    vlkskklragkgkyrnrrwtqrrgplvvyaedngivkalrnvpgvetanvaslnllqlap
    gahlgrfviwteaaftkldqvwgsetvas
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >2wwaI (I:)
    marygatstnpaksasargsylrvsfkntretaqaingweltkaqkyleqvldhqraipf
    rrfnssigrtaqgkefgvtkarwpaksvkfvqgllqnaaanaeakgldatklyvshiqvn
    qapkqrrrtyrahgrinkyesspshielvvtekeeavakaaekkvvrltsrqrgriaaqk
    riaa
    

    Sequence, based on observed residues (ATOM records):
    >2wwaI (I:)
    marygatstnpaksasargsylrvsfkntretaqaingweltkaqkyleqvldhqraipf
    rrfnssigrtaqgkefgvtkarwpaksvkfvqgllqnaaanaeakgldatklyvshiqvn
    qapkqrrrtyrahgrinkyesspshielvvtek
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >2wwaJ (J:)
    manlrtqkrlaasvvgvgkrkvwldpnetseiaqansrnairklvkngtivkkavtvhsk
    srtrahaqskregrhsgygkrkgtrearlpsqvvwirrlrvlrrllakyrdagkidkhly
    hvlykeskgnafkhkralvehiiqakadaqrekalneeaearrlknraardrraqrvaek
    rdallkeda
    

    Sequence, based on observed residues (ATOM records):
    >2wwaJ (J:)
    manlrtqkrlaasvvgvgkrkvwldpnetseiaqansrnairklvkngtivkk
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >2wwaK (K:)
    mapsakataakkavvkgtngkkalkvrtsatfrlpktlklarapkyaskavphynrldsy
    kvieqpitsetamkkvedgnilvfqvsmkankyqikkavkelyevdvlkvntlvrpngtk
    kayvrltadydaldianrigyi
    

    Sequence, based on observed residues (ATOM records):
    >2wwaK (K:)
    ldsykvieqpitsetamkkvedgnilvfqvsmkankyqikkavkelyevdvlkvntlvrp
    ngtkkayvrltadydaldianri
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >2wwaL (L:)
    makqsldvssdrrkarkayftapssqrrvllsaplskelraqygikalpirrddevlvvr
    gskkgqegkissvyrlkfavqvdkvtkekvngasvpinlhpsklvitklhldkdrkaliq
    rkggkle
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >2wwaM (M:)
    maglkdvvtreytinlhkrlhgvsfkkrapravkeikkfaklhmgtddvrlapelnqaiw
    krgvkgveyrlrlrisrkrneeedaknplfsyvepvlvasakglqtvvveeda
    

    Sequence, based on observed residues (ATOM records):
    >2wwaM (M:)
    treytinlhkrlhgvsfkkrapravkeikkfaklhmgtddvrlapelnqaiwkrgvkgve
    yrlrlrisrkrneeedaknplfsy
    

  • Chain 'N':
    Sequence, based on SEQRES records:
    >2wwaN (N:)
    magvkayelrtkskeqlasqlvdlkkelaelkvqklsrpslpkiktvrksiacvltvine
    qqreavrqlykgkkyqpkdlrakktralrraltkfeasqvtekqrkkqiafpqrkyaika
    

    Sequence, based on observed residues (ATOM records):
    >2wwaN (N:)
    magvkayelrtkskeqlasqlvdlkkelaelkvqklsrpslpkiktvrksiacvltvine
    qqreavrql
    

  • Chain 'O':
    Sequence, based on SEQRES records:
    >2wwaO (O:)
    maaqksfrikqkmakakkqnrplpqwirlrtnntirynakrrnwrrtkmni
    

    Sequence, based on observed residues (ATOM records):
    >2wwaO (O:)
    maaqksfrikqkmakakkqnrplpqwirlrtnntiry