PDB entry 2wvd

View 2wvd on RCSB PDB site
Description: structural and mechanistic insights into helicobacter pylori nikr function
Class: transcription
Keywords: transcription factor, transcription regulation, rhh DNA-binding, transcription, metal-binding, metalloregulator
Deposited on 2009-10-16, released 2010-01-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-05-26, with a file datestamp of 2010-05-21.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.2064
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: putative nickel-responsive regulator
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O25896
      • engineered mutation (95)
    Domains in SCOPe 2.08: d2wvda1, d2wvda2
  • Chain 'B':
    Compound: putative nickel-responsive regulator
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O25896
      • engineered mutation (95)
    Domains in SCOPe 2.08: d2wvdb1, d2wvdb2
  • Chain 'C':
    Compound: putative nickel-responsive regulator
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O25896
      • engineered mutation (95)
    Domains in SCOPe 2.08: d2wvdc1, d2wvdc2
  • Chain 'D':
    Compound: putative nickel-responsive regulator
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O25896
      • engineered mutation (95)
    Domains in SCOPe 2.08: d2wvdd1, d2wvdd2
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2wvdA (A:)
mdtpnkddsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpn
deskiavlvviydhhqrelnqrmidiqhasgthvlstthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >2wvdA (A:)
kddsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwapndeskiavl
vviydhhqrelnqrmidiqhasgthvlstthihmdehncletiilqgnsfeiqrlqleig
glrgvkfakltka

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2wvdB (B:)
mdtpnkddsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpn
deskiavlvviydhhqrelnqrmidiqhasgthvlstthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >2wvdB (B:)
siirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavl
vviydhhqrelnqrmidiqhasgthvlstthihmdehncletiilqgnsfeiqrlqleig
glrgvkfakltkass

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2wvdC (C:)
mdtpnkddsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpn
deskiavlvviydhhqrelnqrmidiqhasgthvlstthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >2wvdC (C:)
dsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwndeskiavlvviy
dhhqrelnqrmidiqhasgthvlstthihmdehncletiilqgnsfeiqrlqleigglrg
vkfakltkassfe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2wvdD (D:)
mdtpnkddsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpn
deskiavlvviydhhqrelnqrmidiqhasgthvlstthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >2wvdD (D:)
dsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiav
lvviydhhqrelnqrmidiqhasgthvlstthihmdehncletiilqgnsfeiqrlqlei
gglrgvkfakltkassfe