PDB entry 2wv5
View 2wv5 on RCSB PDB site
Description: crystal structure of foot-and-mouth disease virus 3c protease in complex with a decameric peptide corresponding to the vp1-2a cleavage junction with a gln to glu substitution at p1
Class: hydrolase/peptide
Keywords: 3C PROTEASE, HYDROLASE, VIRAL PROTEIN, HYDROLASE PEPTIDE COMPLEX, HYDROLASE-PEPTIDE complex
Deposited on
2009-10-13, released
2009-10-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2010-02-09, with a file datestamp of
2010-02-05.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.236
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: picornain 3c
Species: FOOT-AND-MOUTH DISEASE VIRUS [TaxId:12112]
Database cross-references and differences (RAF-indexed):
- PDB 2WV5
- see remark 999 (22)
- see remark 999 (88)
- engineered mutation (95)
- engineered mutation (142)
- engineered mutation (163)
- Uniprot P03306
Domains in SCOPe 2.08: d2wv5a_ - Chain 'B':
Compound: picornain 3c
Species: FOOT-AND-MOUTH DISEASE VIRUS [TaxId:12112]
Database cross-references and differences (RAF-indexed):
- PDB 2WV5
- see remark 999 (22)
- see remark 999 (88)
- engineered mutation (95)
- engineered mutation (142)
- engineered mutation (163)
- Uniprot P03306
Domains in SCOPe 2.08: d2wv5b_ - Chain 'C':
Compound: picornain 3c
Species: FOOT-AND-MOUTH DISEASE VIRUS [TaxId:12112]
Database cross-references and differences (RAF-indexed):
- PDB 2WV5
- see remark 999 (22)
- see remark 999 (88)
- engineered mutation (95)
- engineered mutation (142)
- engineered mutation (163)
- Uniprot P03306
Domains in SCOPe 2.08: d2wv5c_ - Chain 'D':
Compound: picornain 3c
Species: FOOT-AND-MOUTH DISEASE VIRUS [TaxId:12112]
Database cross-references and differences (RAF-indexed):
- PDB 2WV5
- see remark 999 (22)
- see remark 999 (88)
- engineered mutation (95)
- engineered mutation (142)
- engineered mutation (163)
- Uniprot P03306
Domains in SCOPe 2.08: d2wv5d_ - Chain 'E':
Compound: foot and mouth disease virus (serotype a) variant vp1 capsid protein
Species: FOOT-AND-MOUTH DISEASE VIRUS, synthetic [TaxId:12112]
Database cross-references and differences (RAF-indexed):
- PDB 2WV5
- Uniprot Q65050 (0-End)
- Chain 'F':
Compound: foot and mouth disease virus (serotype a) variant vp1 capsid protein
Species: FOOT-AND-MOUTH DISEASE VIRUS, synthetic [TaxId:12112]
Database cross-references and differences (RAF-indexed):
- PDB 2WV5
- Uniprot Q65050 (0-End)
- Chain 'G':
Compound: foot and mouth disease virus (serotype a) variant vp1 capsid protein
Species: FOOT-AND-MOUTH DISEASE VIRUS, synthetic [TaxId:12112]
Database cross-references and differences (RAF-indexed):
- PDB 2WV5
- Uniprot Q65050 (0-End)
- Chain 'H':
Compound: foot and mouth disease virus (serotype a) variant vp1 capsid protein
Species: FOOT-AND-MOUTH DISEASE VIRUS, synthetic [TaxId:12112]
Database cross-references and differences (RAF-indexed):
- PDB 2WV5
- Uniprot Q65050 (0-End)
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2wv5A (A:)
gsgapptdlqkmvmgntkpvelildgktvaiccatgvfgtaylvprhlfaekydkimldg
ramtdsdyrvfefeikvkgqdmlsdaalmvlhrgnkvrditkhfrdtarmkkgtpvvgvv
nnadvgrlifsgealtykdivvlmdgdtmpglfaykaatragyaggavlakdgadtfivg
thsaggngvgycscvsrsmlqkmkahvdpephhe
Sequence, based on observed residues (ATOM records): (download)
>2wv5A (A:)
dlqkmvmgntkpvelildgktvaiccatgvfgtaylvprhlfaekydkimldgramtdsd
yrvfefeikvkgqdmlsdaalmvlhrgnkvrditkhfrdtarmkkgtpvvgvvnnadvgr
lifsgealtykdivvlmdgdtmpglfaykaatragyaggavlakdgadtfivgthsaggn
gvgycscvsrsmlqkmkahv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2wv5B (B:)
gsgapptdlqkmvmgntkpvelildgktvaiccatgvfgtaylvprhlfaekydkimldg
ramtdsdyrvfefeikvkgqdmlsdaalmvlhrgnkvrditkhfrdtarmkkgtpvvgvv
nnadvgrlifsgealtykdivvlmdgdtmpglfaykaatragyaggavlakdgadtfivg
thsaggngvgycscvsrsmlqkmkahvdpephhe
Sequence, based on observed residues (ATOM records): (download)
>2wv5B (B:)
dlqkmvmgntkpvelildgktvaiccatgvfgtaylvprhlfaekydkimldgramtdsd
yrvfefeikvkgqdmlsdaalmvlhrgnkvrditkhfrdtarmkkgtpvvgvvnnadvgr
lifsgealtykdivvlmdgdtmpglfaykaatragyaggavlakdgadtfivgthsaggn
gvgycscvsrsmlqkmkahv
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2wv5C (C:)
gsgapptdlqkmvmgntkpvelildgktvaiccatgvfgtaylvprhlfaekydkimldg
ramtdsdyrvfefeikvkgqdmlsdaalmvlhrgnkvrditkhfrdtarmkkgtpvvgvv
nnadvgrlifsgealtykdivvlmdgdtmpglfaykaatragyaggavlakdgadtfivg
thsaggngvgycscvsrsmlqkmkahvdpephhe
Sequence, based on observed residues (ATOM records): (download)
>2wv5C (C:)
dlqkmvmgntkpvelildgktvaiccatgvfgtaylvprhlfaekydkimldgramtdsd
yrvfefeikvkgqdmlsdaalmvlhrgnkvrditkhfrdtarmkkgtpvvgvvnnadvgr
lifsgealtykdivvlmdgdtmpglfaykaatragyaggavlakdgadtfivgthsaggn
gvgycscvsrsmlqkmkahv
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2wv5D (D:)
gsgapptdlqkmvmgntkpvelildgktvaiccatgvfgtaylvprhlfaekydkimldg
ramtdsdyrvfefeikvkgqdmlsdaalmvlhrgnkvrditkhfrdtarmkkgtpvvgvv
nnadvgrlifsgealtykdivvlmdgdtmpglfaykaatragyaggavlakdgadtfivg
thsaggngvgycscvsrsmlqkmkahvdpephhe
Sequence, based on observed residues (ATOM records): (download)
>2wv5D (D:)
dlqkmvmgntkpvelildgktvaiccatgvfgtaylvprhlfaekydkimldgramtdsd
yrvfefeikvkgqdmlsdaalmvlhrgnkvrditkhfrdtarmkkgtpvvgvvnnadvgr
lifsgealtykdivvlmdgdtmpglfaykaatragyaggavlakdgadtfivgthsaggn
gvgycscvsrsmlqkmkahv
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.