PDB entry 2wqy
View 2wqy on RCSB PDB site
Description: Remodelling of carboxin binding to the Q-site of avian respiratory complex II
Class: oxidoreductase
Keywords: oxaloacetate nitropropionate ubiquinone, respiratory chain, complex II, cytocrome b, redox enzyme, heme protein, flavoprotein, oxidoreductase, metal-binding, mitochondrion inner membrane, iron sulfur protein, tricarboxylic acid cycle
Deposited on
2009-08-27, released
2010-08-25
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-06-29.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Succinate dehydrogenase flavoprotein subunit
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YHT1 (Start-620)
- conflict (500)
- conflict (555)
- conflict (559)
- Chain 'B':
Compound: succinate dehydrogenase Ip subunit
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2wqyb1, d2wqyb2 - Chain 'C':
Compound: Succinate dehydrogenase cytochrome B, large subunit
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2wqyc_ - Chain 'D':
Compound: Succinate dehydrogenase cytochrome B, small subunit
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2wqyd_ - Chain 'N':
Compound: Succinate dehydrogenase flavoprotein subunit
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9YHT1 (Start-620)
- conflict (500)
- conflict (555)
- conflict (559)
- Chain 'O':
Compound: succinate dehydrogenase Ip subunit
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2wqyo1, d2wqyo2 - Chain 'P':
Compound: Succinate dehydrogenase cytochrome B, large subunit
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2wqyp_ - Chain 'Q':
Compound: Succinate dehydrogenase cytochrome B, small subunit
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2wqyq_ - Heterogens: UNL, K, AZI, FAD, OAA, FES, SF4, F3S, GOL, BHG, HEM, CBE, PEE, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2wqyB (B:)
aqtaaaatsrikkfsiyrwdpdkpgdkprmqtyevdlnkcgpmvldalikikneldstlt
frrscregicgscamniaggntlactkkidpdlskttkiyplphmyvvkdlvpdlsnfya
qyksiepylkkkdeskqgkeqylqsiedrqkldglyecilcaccstscpsywwngdkylg
pavlmqayrwmidsrddyteerlaqlqdpfslyrchtimnctrtcpkglnpgkaiaeikk
mmatykekaaaa
Sequence, based on observed residues (ATOM records): (download)
>2wqyB (B:)
tsrikkfsiyrwdpdkpgdkprmqtyevdlnkcgpmvldalikikneldstltfrrscre
gicgscamniaggntlactkkidpdlskttkiyplphmyvvkdlvpdlsnfyaqyksiep
ylkkkdeskqgkeqylqsiedrqkldglyecilcaccstscpsywwngdkylgpavlmqa
yrwmidsrddyteerlaqlqdpfslyrchtimnctrtcpkglnpgkaiaeikkmmatyk
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2wqyC (C:)
mattakeemarfwekntkssrplsphisiykwslpmamsithrgtgvalslgvslfsvaa
lllpeqfphyvavvkslslspaliysakfalvfplsyhtwngirhlvwdmgkgfklsqve
qsgvvvliltllssagiaais
Sequence, based on observed residues (ATOM records): (download)
>2wqyC (C:)
attakeemarfwekntkssrplsphisiykwslpmamsithrgtgvalslgvslfsvaal
llpeqfphyvavvkslslspaliysakfalvfplsyhtwngirhlvwdmgkgfklsqveq
sgvvvliltllssagiaais
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2wqyD (D:)
gsskaaslhwtseravsalllgllpaaylypgpavdyslaaaltlhghwglgqvitdyvh
gdtpikvantglyvlsaitftglcyfnyydvgickavamlwsi
Sequence, based on observed residues (ATOM records): (download)
>2wqyD (D:)
skaaslhwtseravsalllgllpaaylypgpavdyslaaaltlhghwglgqvitdyvhgd
tpikvantglyvlsaitftglcyfnyydvgickavamlwsi
- Chain 'N':
No sequence available.
- Chain 'O':
Sequence, based on SEQRES records: (download)
>2wqyO (O:)
aqtaaaatsrikkfsiyrwdpdkpgdkprmqtyevdlnkcgpmvldalikikneldstlt
frrscregicgscamniaggntlactkkidpdlskttkiyplphmyvvkdlvpdlsnfya
qyksiepylkkkdeskqgkeqylqsiedrqkldglyecilcaccstscpsywwngdkylg
pavlmqayrwmidsrddyteerlaqlqdpfslyrchtimnctrtcpkglnpgkaiaeikk
mmatykekaaaa
Sequence, based on observed residues (ATOM records): (download)
>2wqyO (O:)
tsrikkfsiyrwdpdkpgdkprmqtyevdlnkcgpmvldalikikneldstltfrrscre
gicgscamniaggntlactkkidpdlskttkiyplphmyvvkdlvpdlsnfyaqyksiep
ylkkkdeskqgkeqylqsiedrqkldglyecilcaccstscpsywwngdkylgpavlmqa
yrwmidsrddyteerlaqlqdpfslyrchtimnctrtcpkglnpgkaiaeikkmmatyk
- Chain 'P':
Sequence, based on SEQRES records: (download)
>2wqyP (P:)
mattakeemarfwekntkssrplsphisiykwslpmamsithrgtgvalslgvslfsvaa
lllpeqfphyvavvkslslspaliysakfalvfplsyhtwngirhlvwdmgkgfklsqve
qsgvvvliltllssagiaais
Sequence, based on observed residues (ATOM records): (download)
>2wqyP (P:)
attakeemarfwekntkssrplsphisiykwslpmamsithrgtgvalslgvslfsvaal
llpeqfphyvavvkslslspaliysakfalvfplsyhtwngirhlvwdmgkgfklsqveq
sgvvvliltllssagiaais
- Chain 'Q':
Sequence, based on SEQRES records: (download)
>2wqyQ (Q:)
gsskaaslhwtseravsalllgllpaaylypgpavdyslaaaltlhghwglgqvitdyvh
gdtpikvantglyvlsaitftglcyfnyydvgickavamlwsi
Sequence, based on observed residues (ATOM records): (download)
>2wqyQ (Q:)
skaaslhwtseravsalllgllpaaylypgpavdyslaaaltlhghwglgqvitdyvhgd
tpikvantglyvlsaitftglcyfnyydvgickavamlwsi