PDB entry 2wpd

View 2wpd on RCSB PDB site
Description: the mg.adp inhibited state of the yeast f1c10 atp synthase
Deposited on 2009-08-05, released 2010-07-07
The last revision was dated 2011-04-06, with a file datestamp of 2011-04-01.
Experiment type: XRAY
Resolution: 3.43 Å
R-factor: 0.2868
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: ATP synthase subunit gamma, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: ATP synthase subunit delta, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: ATP synthase subunit epsilon, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: ATP synthase subunit 9, mitochondrial
    Species: SACCHAROMYCES CEREVISIAE [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ATP, MG, ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2wpdA (A:)
    astkaqptevssileerikgvsdeanlnetgrvlavgdgiarvfglnniqaeelvefssg
    vkgmalnlepgqvgivlfgsdrlvkegelvkrtgnivdvpvgpgllgrvvdalgnpidgk
    gpidaagrsraqvkapgilprrsvhepvqtglkavdalvpigrgqreliigdrqtgktav
    aldtilnqkrwnngsdeskklycvyvavgqkrstvaqlvqtleqhdamkysiivaatase
    aaplqylapftaasigewfrdngkhalivyddlskqavayrqlslllrrppgreaypgdv
    fylhsrlleraaklsekegsgsltalpvietqggdvsayiptnvisitdgqifleaelfy
    kgirpainvglsvsrvgsaaqvkalkqvagslklflaqyrevaafaqfgsdldastkqtl
    vrgerltqllkqnqysplateeqvpliyagvnghldgielsrigefessflsylksnhne
    llteirekgelskellaslksatesfvatf
    

    Sequence, based on observed residues (ATOM records):
    >2wpdA (A:)
    nlnetgrvlavgdgiarvfglnniqaeelvefssgvkgmalnlepgqvgivlfgsdrlvk
    egelvkrtgnivdvpvgpgllgrvvdalgnpidgkgpidaagrsraqvkapgilprrsvh
    epvqtglkavdalvpigrgqreliigdrqtgktavaldtilnqkrwnngsdeskklycvy
    vavgqkrstvaqlvqtleqhdamkysiivaataseaaplqylapftaasigewfrdngkh
    alivyddlskqavayrqlslllrrppgreaypgdvfylhsrlleraaklsekegsgslta
    lpvietqggdvsayiptnvisitdgqifleaelfykgirpainvglsvsrvgsaaqvkal
    kqvagslklflaqyrevaafaqfgsdldastkqtlvrgerltqllkqnqysplateeqvp
    liyagvnghldgielsrigefessflsylksnhnellteirekgelskellaslksates
    fvatf
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2wpdB (B:)
    astkaqptevssileerikgvsdeanlnetgrvlavgdgiarvfglnniqaeelvefssg
    vkgmalnlepgqvgivlfgsdrlvkegelvkrtgnivdvpvgpgllgrvvdalgnpidgk
    gpidaagrsraqvkapgilprrsvhepvqtglkavdalvpigrgqreliigdrqtgktav
    aldtilnqkrwnngsdeskklycvyvavgqkrstvaqlvqtleqhdamkysiivaatase
    aaplqylapftaasigewfrdngkhalivyddlskqavayrqlslllrrppgreaypgdv
    fylhsrlleraaklsekegsgsltalpvietqggdvsayiptnvisitdgqifleaelfy
    kgirpainvglsvsrvgsaaqvkalkqvagslklflaqyrevaafaqfgsdldastkqtl
    vrgerltqllkqnqysplateeqvpliyagvnghldgielsrigefessflsylksnhne
    llteirekgelskellaslksatesfvatf
    

    Sequence, based on observed residues (ATOM records):
    >2wpdB (B:)
    anlnetgrvlavgdgiarvfglnniqaeelvefssgvkgmalnlepgqvgivlfgsdrlv
    kegelvkrtgnivdvpvgpgllgrvvdalgnpidgkgpidaagrsraqvkapgilprrsv
    hepvqtglkavdalvpigrgqreliigdrqtgktavaldtilnqkrwnngsdeskklycv
    yvavgqkrstvaqlvqtleqhdamkysiivaataseaaplqylapftaasigewfrdngk
    halivyddlskqavayrqlslllrrppgreaypgdvfylhsrlleraaklsekegsgslt
    alpvietqggdvsayiptnvisitdgqifleaelfykgirpainvglsvsrvgsaaqvka
    lkqvagslklflaqyrevaafaqfgsdldastkqtlvrgerltqllkqnqysplateeqv
    pliyagvnghldgielsrigefessflsylksnhnellteirekgelskellaslksate
    sfvat
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2wpdC (C:)
    astkaqptevssileerikgvsdeanlnetgrvlavgdgiarvfglnniqaeelvefssg
    vkgmalnlepgqvgivlfgsdrlvkegelvkrtgnivdvpvgpgllgrvvdalgnpidgk
    gpidaagrsraqvkapgilprrsvhepvqtglkavdalvpigrgqreliigdrqtgktav
    aldtilnqkrwnngsdeskklycvyvavgqkrstvaqlvqtleqhdamkysiivaatase
    aaplqylapftaasigewfrdngkhalivyddlskqavayrqlslllrrppgreaypgdv
    fylhsrlleraaklsekegsgsltalpvietqggdvsayiptnvisitdgqifleaelfy
    kgirpainvglsvsrvgsaaqvkalkqvagslklflaqyrevaafaqfgsdldastkqtl
    vrgerltqllkqnqysplateeqvpliyagvnghldgielsrigefessflsylksnhne
    llteirekgelskellaslksatesfvatf
    

    Sequence, based on observed residues (ATOM records):
    >2wpdC (C:)
    nlnetgrvlavgdgiarvfglnniqaeelvefssgvkgmalnlepgqvgivlfgsdrlvk
    egelvkrtgnivdvpvgpgllgrvvdalgnpidgkgpidaagrsraqvkapgilprrsvh
    epvqtglkavdalvpigrgqreliigdrqtgktavaldtilnqkrwnngsdeskklycvy
    vavgqkrstvaqlvqtleqhdamkysiivaataseaaplqylapftaasigewfrdngkh
    alivyddlskqavayrqlslllrrppgreaypgdvfylhsrlleraaklsekegsgslta
    lpvietqggdvsayiptnvisitdgqifleaelfykgirpainvglsvsrvgsaaqvkal
    kqvagslklflaqyrevaafaqfgsdldastkqtlvrgerltqllkqnqysplateeqvp
    liyagvnghldgielsrigefessflsylksnhnellteirekgelskellaslksates
    fvatf
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2wpdD (D:)
    asaaqstpitgkvtavigaivdvhfeqselpailnaleiktpqgklvlevaqhlgentvr
    tiamdgteglvrgekvldtggpisvpvgretlgriinvigepidergpiksklrkpihad
    ppsfaeqstsaeiletgikvvdllapyarggkiglfggagvgktvfiqelinniakahgg
    fsvftgvgertregndlyremketgvinlegeskvalvfgqmneppgararvaltgltia
    eyfrdeegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgllqeritttk
    kgsvtsvqavyvpaddltdpapattfahldattvlsrgiselgiypavdpldsksrllda
    avvgqehydvaskvqetlqtykslqdiiailgmdelseqdkltverarkiqrflsqpfav
    aevftgipgklvrlkdtvasfkavlegkydnipehafymvggiedvvakaeklaaean
    

    Sequence, based on observed residues (ATOM records):
    >2wpdD (D:)
    stpitgkvtavigaivdvhfeqselpailnaleiktpqgklvlevaqhlgentvrtiamd
    gteglvrgekvldtggpisvpvgretlgriinvigepidergpiksklrkpihadppsfa
    eqstsaeiletgikvvdllapyarggkiglfggagvgktvfiqelinniakahggfsvft
    gvgertregndlyremketgvinlegeskvalvfgqmneppgararvaltgltiaeyfrd
    eegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgllqeritttkkgsvt
    svqavyvpaddltdpapattfahldattvlsrgiselgiypavdpldsksrlldaavvgq
    ehydvaskvqetlqtykslqdiiailgmdelseqdkltverarkiqrflsqpfavaevft
    gipgklvrlkdtvasfkavlegkydnipehafymvggiedvvakaeklaa
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2wpdE (E:)
    asaaqstpitgkvtavigaivdvhfeqselpailnaleiktpqgklvlevaqhlgentvr
    tiamdgteglvrgekvldtggpisvpvgretlgriinvigepidergpiksklrkpihad
    ppsfaeqstsaeiletgikvvdllapyarggkiglfggagvgktvfiqelinniakahgg
    fsvftgvgertregndlyremketgvinlegeskvalvfgqmneppgararvaltgltia
    eyfrdeegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgllqeritttk
    kgsvtsvqavyvpaddltdpapattfahldattvlsrgiselgiypavdpldsksrllda
    avvgqehydvaskvqetlqtykslqdiiailgmdelseqdkltverarkiqrflsqpfav
    aevftgipgklvrlkdtvasfkavlegkydnipehafymvggiedvvakaeklaaean
    

    Sequence, based on observed residues (ATOM records):
    >2wpdE (E:)
    stpitgkvtavigaivdvhfeqselpailnaleiktpqgklvlevaqhlgentvrtiamd
    gteglvrgekvldtggpisvpvgretlgriinvigepidergpiksklrkpihadppsfa
    eqstsaeiletgikvvdllapyarggkiglfggagvgktvfiqelinniakahggfsvft
    gvgertregndlyremketgvinlegeskvalvfgqmneppgararvaltgltiaeyfrd
    eegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgllqeritttkkgsvt
    svqavyvpaddltdpapattfahldattvlsrgiselgiypavdpldsksrlldaavvgq
    ehydvaskvqetlqtykslqdiiailgmdelseqdkltverarkiqrflsqpfavaevft
    gipgklvrlkdtvasfkavlegkydnipehafymvggiedvvakaeklaaean
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2wpdF (F:)
    asaaqstpitgkvtavigaivdvhfeqselpailnaleiktpqgklvlevaqhlgentvr
    tiamdgteglvrgekvldtggpisvpvgretlgriinvigepidergpiksklrkpihad
    ppsfaeqstsaeiletgikvvdllapyarggkiglfggagvgktvfiqelinniakahgg
    fsvftgvgertregndlyremketgvinlegeskvalvfgqmneppgararvaltgltia
    eyfrdeegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgllqeritttk
    kgsvtsvqavyvpaddltdpapattfahldattvlsrgiselgiypavdpldsksrllda
    avvgqehydvaskvqetlqtykslqdiiailgmdelseqdkltverarkiqrflsqpfav
    aevftgipgklvrlkdtvasfkavlegkydnipehafymvggiedvvakaeklaaean
    

    Sequence, based on observed residues (ATOM records):
    >2wpdF (F:)
    tpitgkvtavigaivdvhfeqselpailnaleiktpqgklvlevaqhlgentvrtiamdg
    teglvrgekvldtggpisvpvgretlgriinvigepidergpiksklrkpihadppsfae
    qstsaeiletgikvvdllapyarggkiglfggagvgktvfiqelinniakahggfsvftg
    vgertregndlyremketgvinlegeskvalvfgqmneppgararvaltgltiaeyfrde
    egqdvllfidnifrftqagsevsallgripsavgyqptlatdmgllqeritttkkgsvts
    vqavyvpaddltdpapattfahldattvlsrgiselgiypavdpldsksrlldaavvgqe
    hydvaskvqetlqtykslqdiiailgmdelseqdkltverarkiqrflsqpfavaevftg
    ipgklvrlkdtvasfkavlegkydnipehafymvggiedvvakaeklaaean
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2wpdG (G:)
    atlkevemrlksikniekitktmkivastrlskaekakisakkmdeaeqlfyknaetknl
    dveatetgapkelivaitsdkglcgsihsqlakavrrhlndqpnadivtigdkikmqllr
    thpnniklsingigkdaptfqesaliadkllsvmkagtypkisifyndpvsslsfepsek
    pifnaktieqspsfgkfeidtdanvprdlfeytlanqmltamaqgyaaeisarrnamdna
    sknagdminrysilynrtrqavitnelvdiitgasslg
    

    Sequence, based on observed residues (ATOM records):
    >2wpdG (G:)
    atlkevemrlksikniekitktmkivastrlskaekakisakkmdeaeqlfyknaetknl
    dkelivaitsdkglcgsihsqlakavrrhlndqpnadivtigdkikmqllrthpnnikls
    ingigkdaptfqesaliadkllsvmkagtypkisifyndpvsslsfepsekpifnaktie
    qspsfgkfeidtdanvprdlfeytlanqmltamaqgyaaeisarrnamdnasknagdmin
    rysilynrtrqavitnelvdiitgasslg
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2wpdH (H:)
    aeaaaassglklqfalphetlysgsevtqvnlpaksgrigvlanhvptveqllpgvvevm
    egsnskkffisggfatvqpdsqlcvtaieafplesfsqeniknllaeakknvsssdarea
    aeaaiqvevlenlqsvlk
    

    Sequence, based on observed residues (ATOM records):
    >2wpdH (H:)
    ssglklqfalphetlysgsevtqvnlpaksgrigvlanhvptveqllpgvvevmegsnsk
    kffisggfatvqpdsqlcvtaieafplesfsqeniknllaeakknvsssdareaaeaaiq
    vevlenlqsvlk
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >2wpdI (I:)
    sawrkagisyaaylnvaaqairsslktelqtasvlnrsqtdafytqykngtaaseptpit
    k
    

    Sequence, based on observed residues (ATOM records):
    >2wpdI (I:)
    sawrkagisyaaylnvaaqairsslktelqtasvlnrsqtdafytqykngtaaseptpi
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdJ (J:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdK (K:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdL (L:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdM (M:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdN (N:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv
    

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdO (O:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv
    

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdP (P:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv
    

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdQ (Q:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv
    

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdR (R:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv
    

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records:
    >2wpdS (S:)
    mqlvlaakyigagistigllgagigiaivfaalingvsrnpsikdtvfpmailgfalsea
    tglfclmvsflllfgv