PDB entry 2wmj

View 2wmj on RCSB PDB site
Description: Crystal structure of the catalytic module of a family 98 glycoside hydrolase from Streptococcus pneumoniae SP3-BS71 (Sp3GH98) in complex with the B-trisaccharide blood group antigen.
Class: hydrolase
Keywords: glycoside hydrolase, streptococcus pneumoniae, hydrolase, fucose utilization, blood group antigen
Deposited on 2009-06-30, released 2009-07-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fucolectin-related protein
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WMJ
    • Uniprot A5LBQ0 (Start-603)
    Domains in SCOPe 2.08: d2wmja1, d2wmja2
  • Chain 'B':
    Compound: fucolectin-related protein
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WMJ
    • Uniprot A5LBQ0 (Start-603)
    Domains in SCOPe 2.08: d2wmjb1, d2wmjb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2wmjA (A:)
    mgsshhhhhhssglvprgshmasevdkrreinnehpllmmplyangeefnqgkytfwggd
    tltgkwenipddlkpytviqlhpddlpkrdgaardfyehmleeaakyvnpktgknepipv
    iltvytagnmpyytsahwlstswidkmyqkypnlhgifstenywiwandienkaadylkv
    saknggyfiwaeqnngsaiekafgkngkiafqksvdkywknlifmfkntpaaegndstte
    symkglwlsnhtyqwgglmdtwkwyetgkwklfasgnigksqgdrqwltepesmlgeeal
    gvylnggvvynfehpaytygvnnkesllfsevikeffryviahpapskekvledtkvfih
    gdysnkgngkffvnvntdreqtplymtgrynvipaipgvlktdklkesvsssriqikeit
    spefsstqarkeylnklypmnyegdifaqkldnrwfvynykvnenvkqtgklkfnslemn
    vefephtygiferisnglkvnlnnfrtnkdslwsnaqdanqakklpqltkkgaikwieeh
    yikdtqfgekrvtkivlrgidklptihslsgtnnsydqpslnfdqknhmvtitinsngnl
    efelhf
    

    Sequence, based on observed residues (ATOM records): (download)
    >2wmjA (A:)
    vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
    dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
    dkmyqkypnlhgifstenywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
    kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
    yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
    esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
    ymtgrynvipaipgvlktdiqikeitspefsstqarkeylnklypmnyegdifaqkldnr
    wfvynykvnenvkqtgklkfnslemnvefephtygiferisnglkvnlnnfrtnkdslws
    naqdanqakklpqltkkgaikwieehyikdtqfgekrvtkivlrgidklptihslsgtnn
    sydqpslnfdqknhmvtitinsngnlefelhf
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2wmjB (B:)
    mgsshhhhhhssglvprgshmasevdkrreinnehpllmmplyangeefnqgkytfwggd
    tltgkwenipddlkpytviqlhpddlpkrdgaardfyehmleeaakyvnpktgknepipv
    iltvytagnmpyytsahwlstswidkmyqkypnlhgifstenywiwandienkaadylkv
    saknggyfiwaeqnngsaiekafgkngkiafqksvdkywknlifmfkntpaaegndstte
    symkglwlsnhtyqwgglmdtwkwyetgkwklfasgnigksqgdrqwltepesmlgeeal
    gvylnggvvynfehpaytygvnnkesllfsevikeffryviahpapskekvledtkvfih
    gdysnkgngkffvnvntdreqtplymtgrynvipaipgvlktdklkesvsssriqikeit
    spefsstqarkeylnklypmnyegdifaqkldnrwfvynykvnenvkqtgklkfnslemn
    vefephtygiferisnglkvnlnnfrtnkdslwsnaqdanqakklpqltkkgaikwieeh
    yikdtqfgekrvtkivlrgidklptihslsgtnnsydqpslnfdqknhmvtitinsngnl
    efelhf
    

    Sequence, based on observed residues (ATOM records): (download)
    >2wmjB (B:)
    vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
    dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
    dkmyqkypnlhgifstenywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
    kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
    yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
    esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
    ymtgrynvipaipgvlktiqikeitspefsstqarkeylnklypmnyegdifaqkldnrw
    fvynykvnenvkqtgklkfnslemnvefephtygiferisnglkvnlnnfrtnkdslwsn
    aqdanqakklpqltkkgaikwieehyikdtqfgekrvtkivlrgidklptihslsgtnns
    ydqpslnfdqknhmvtitinsngnlefelhf