PDB entry 2wmi

View 2wmi on RCSB PDB site
Description: Crystal structure of the catalytic module of a family 98 glycoside hydrolase from Streptococcus pneumoniae SP3-BS71 in complex with the A-trisaccharide blood group antigen.
Class: hydrolase
Keywords: glycoside hydrolase, hydrolase, fucose utilization, blood group antigen
Deposited on 2009-06-30, released 2009-07-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fucolectin-related protein
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2wmia1, d2wmia2
  • Chain 'B':
    Compound: fucolectin-related protein
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5LBQ0 (Start-605)
      • conflict (348)
    Domains in SCOPe 2.08: d2wmib1, d2wmib2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2wmiA (A:)
mgsshhhhhhssglvprgshmasevdkrreinnehpllmmplyangeefnqgkytfwggd
tltgkwenipddlkpytviqlhpddlpkrdgaardfyehmleeaakyvnpktgknepipv
iltvytagnmpyytsahwlstswidkmyqkypnlhgifstenywiwandienkaadylkv
saknggyfiwaeqnngsaiekafgkngkiafqksvdkywknlifmfkntpaaegndstte
symkglwlsnhtyqwgglmdtwkwyetgkwklfasgnigksqgdrqwltepesmlgeeal
gvylnggvvynfehpaytygvnnkesllfsevikeffryviahpapskekvledtkvfih
gdysnkgngkffvnvntdreqtplymtgrynvipaipgvlktdklkesvsssriqikeit
spefsstqarkeylnklypmnyegdifaqkldnrwfvynykvnenvkqtgklkfnslemn
vefephtygiferisnglkvnlnnfrtnkdslwsnaqdanqakklpqltkkgaikwieeh
yikdtqfgekrvtkivlrgidklptihslsgtnnsydqpslnfdqknhmvtitinsngnl
efelhf

    Sequence, based on observed residues (ATOM records): (download) 
    >2wmiA (A:)
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstenywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktdiqikeitspefsstqarkeylnklypmnyegdifaqkldnr
wfvynykvnenvkqtgklkfnslemnvefephtygiferisnglkvnlnnfrtnkdslws
naqdanqakklpqltkkgaikwieehyikdtqfgekrvtkivlrgidklptihslsgtnn
sydqpslnfdqknhmvtitinsngnlefelhf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2wmiB (B:)
mgsshhhhhhssglvprgshmasevdkrreinnehpllmmplyangeefnqgkytfwggd
tltgkwenipddlkpytviqlhpddlpkrdgaardfyehmleeaakyvnpktgknepipv
iltvytagnmpyytsahwlstswidkmyqkypnlhgifstenywiwandienkaadylkv
saknggyfiwaeqnngsaiekafgkngkiafqksvdkywknlifmfkntpaaegndstte
symkglwlsnhtyqwgglmdtwkwyetgkwklfasgnigksqgdrqwltepesmlgeeal
gvylnggvvynfehpaytygvnnkesllfsevikeffryviahpapskskvledtkvfih
gdysnkgngkffvnvntdreqtplymtgrynvipaipgvlktdklkesvsssriqikeit
spefsstqarkeylnklypmnyegdifaqkldnrwfvynykvnenvkqtgklkfnslemn
vefephtygiferisnglkvnlnnfrtnkdslwsnaqdanqakklpqltkkgaikwieeh
yikdtqfgekrvtkivlrgidklptihslsgtnnsydqpslnfdqknhmvtitinsngnl
efelhf

    Sequence, based on observed residues (ATOM records): (download) 
    >2wmiB (B:)
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstenywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskskvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktiqikeitspefsstqarkeylnklypmnyegdifaqkldnrw
fvynykvnenvkqtgklkfnslemnvefephtygiferisnglkvnlnnfrtnkdslwsn
aqdanqakklpqltkkgaikwieehyikdtqfgekrvtkivlrgidklptihslsgtnns
ydqpslnfdqknhmvtitinsngnlefelhf