PDB entry 2wjv

View 2wjv on RCSB PDB site
Description: crystal structure of the complex between human nonsense mediated decay factors upf1 and upf2
Deposited on 2009-06-01, released 2009-07-07
The last revision was dated 2011-07-13, with a file datestamp of 2011-06-02.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: 0.203
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Regulator of nonsense transcripts 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Regulator of nonsense transcripts 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: regulator of nonsense transcripts 2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HAU5 (3-96)
      • expression tag (0-2)
  • Chain 'E':
    Compound: regulator of nonsense transcripts 2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HAU5 (3-96)
      • expression tag (0-2)
  • Heterogens: ZN, SO4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2wjvA (A:)
    tkdlpihacsycgihdpacvvycntskkwfcngrgntsgshivnhlvrakckevtlhkdg
    plgetvlecyncgcrnvfllgfipakadsvvvllcrqpcasqsslkdinwdssqwqpliq
    drcflswlvkipseqeqlrarqitaqqinkleelwkenpsatledlekpgvdeepqhvll
    ryedayqyqnifgplvkleadydkklkesqtqdnitvrwdlglnkkriayftlpktdsdm
    rlmqgdeiclrykgdlaplwkgighvikvpdnygdeiaielrssvgapvevthnfqvdfv
    wkstsfdrmqsalktfavdetsvsgyiyhkllghevedviikcqlpkrftaqglpdlnhs
    qvyavktvlqrplsliqgppgtgktvtsativyhlarqgngpvlvcapsniavdqlteki
    hqtglkvvrlcaksreaidspvsflalhnqirnmdsmpelqklqqlkdetgelssadekr
    yralkrtaerellmnadvicctcvgagdprlakmqfrsilidestqatepecmvpvvlga
    kqlilvgdhcqlgpvvmckkaakaglsqslferlvvlgirpirlqvqyrmhpalsafpsn
    ifyegslqngvtaadrvkkgfdfqwpqpdkpmffyvtqgqeeiassgtsylnrteaanve
    kittkllkagakpdqigiitpyegqrsylvqymqfsgslhtklyqeveiasvdafqgrek
    dfiilscvranehqgigflndprrlnvaltrarygviivgnpkalskqplwnhllnyyke
    qkvlvegplnnlreslmqfs
    

    Sequence, based on observed residues (ATOM records):
    >2wjvA (A:)
    kdlpihacsycgihdpacvvycntskkwfcngrgntsgshivnhlvrakckevtlhkdgp
    lgetvlecyncgcrnvfllgfipakadsvvvllcrqpcasqsslkwdssqwqpliqdrcf
    lswlvkipseqeqlrarqitaqqinkleelwkenpsatledldeepqhvllryedayqyq
    nifgplvkleadydkklkesqtqdnitvrwdlglnkkriayftlplmqgdeiclrykgdl
    aplwkgighvikvpdeiaiegapvevthnfqvdfvwkstsfdrmqsalktfavdetsvsg
    yiyhkllghevedviikcqlpkrftaqglpdlnhsqvyavktvlqrplsliqgppgtgkt
    vtsativyhlarqgngpvlvcapsniavdqltekihqtglkvvrlcaksreaidspvsfl
    alhnqirnmdsmpelqklqqlkdetgelssadekryralkrtaerellmnadvicctcvg
    agdprlakmqfrsilidestqatepecmvpvvlgakqlilvgdhcqlgpvvmckkaakag
    lsqslferlvvlgirpirlqvqyrmhpalsafpsnifyegslqngvtaadrvkkgfdfqw
    pqpdkpmffyvtqgqeeiassgtsylnrteaanvekittkllkagakpdqigiitpyegq
    rsylvqymqfsgslhtklyqeveiasvdafqgrekdfiilscvranehqgigflndprrl
    nvaltrarygviivgnpkalskqplwnhllnyykeqkvlvegplnnlreslm
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2wjvB (B:)
    tkdlpihacsycgihdpacvvycntskkwfcngrgntsgshivnhlvrakckevtlhkdg
    plgetvlecyncgcrnvfllgfipakadsvvvllcrqpcasqsslkdinwdssqwqpliq
    drcflswlvkipseqeqlrarqitaqqinkleelwkenpsatledlekpgvdeepqhvll
    ryedayqyqnifgplvkleadydkklkesqtqdnitvrwdlglnkkriayftlpktdsdm
    rlmqgdeiclrykgdlaplwkgighvikvpdnygdeiaielrssvgapvevthnfqvdfv
    wkstsfdrmqsalktfavdetsvsgyiyhkllghevedviikcqlpkrftaqglpdlnhs
    qvyavktvlqrplsliqgppgtgktvtsativyhlarqgngpvlvcapsniavdqlteki
    hqtglkvvrlcaksreaidspvsflalhnqirnmdsmpelqklqqlkdetgelssadekr
    yralkrtaerellmnadvicctcvgagdprlakmqfrsilidestqatepecmvpvvlga
    kqlilvgdhcqlgpvvmckkaakaglsqslferlvvlgirpirlqvqyrmhpalsafpsn
    ifyegslqngvtaadrvkkgfdfqwpqpdkpmffyvtqgqeeiassgtsylnrteaanve
    kittkllkagakpdqigiitpyegqrsylvqymqfsgslhtklyqeveiasvdafqgrek
    dfiilscvranehqgigflndprrlnvaltrarygviivgnpkalskqplwnhllnyyke
    qkvlvegplnnlreslmqfs
    

    Sequence, based on observed residues (ATOM records):
    >2wjvB (B:)
    kdlpihacsycgihdpacvvycntskkwfcngrgntsgshivnhlvrakckevtlhkdgp
    lgetvlecyncgcrnvfllgfipakadsvvvllcrqpcasqsslkwdssqwqpliqdrcf
    lswlvkipseqeqlrarqitaqqinkleelwkenpsatledlepqhvllryedayqyqni
    fgplvkleadydkklkesqtqdnitvrwkriayftlplmqgdeiclrykgdlaplwkgig
    hvikvpdeiaielrssvgapvevthnfqvdfvwkstsfdrmqsalktfavdetsvsgyiy
    hkllghevedviikcqlpkrftaqglpdlnhsqvyavktvlqrplsliqgppgtgktvts
    ativyhlarqgngpvlvcapsniavdqltekihqtglkvvrlcaksreaidspvsflalh
    nqirnmdsmpelqklqqlkdetgelssadekryralkrtaerellmnadvicctcvgagd
    prlakmqfrsilidestqatepecmvpvvlgakqlilvgdhcqlgpvvmckkaakaglsq
    slferlvvlgirpirlqvqyrmhpalsafpsnifyegslqngvtaadrvkkgfdfqwpqp
    dkpmffyvtqgqeeigtsylnrteaanvekittkllkagakpdqigiitpyegqrsylvq
    ymqfsgslhtklyqeveiasvdafqgrekdfiilscvranehqgigflndprrlnvaltr
    arygviivgnpkalskqplwnhllnyykeqkvlvegplnnlreslmqf
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2wjvD (D:)
    amgvpcvededfiqaldkmmlenlqqrsgesvkvhqldvaiplhlksqlrkgpplgggeg
    eaesadtmpfvmltrkgnkqqfkilnvpmssqlaanh
    

    Sequence, based on observed residues (ATOM records):
    >2wjvD (D:)
    amgvpcvededfiqaldkmmlenlqqrdtmpfvmltqqfkilnvpmssqlaanh
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2wjvE (E:)
    amgvpcvededfiqaldkmmlenlqqrsgesvkvhqldvaiplhlksqlrkgpplgggeg
    eaesadtmpfvmltrkgnkqqfkilnvpmssqlaanh
    

    Sequence, based on observed residues (ATOM records):
    >2wjvE (E:)
    amgvpcvededfiqaldkmmlenlqqrsdtmpfvmltrkgnkqqfkilnvpmssqlaanh