PDB entry 2wdz

View 2wdz on RCSB PDB site
Description: crystal structure of the short chain dehydrogenase galactitol-dehydrogenase (gatdh) of rhodobacter sphaeroides in complex with nad+ and 1,2-pentandiol
Class: oxidoreductase
Keywords: oxidoreductase, rossmann fold
Deposited on 2009-03-27, released 2010-03-31
The last revision prior to the SCOPe 2.03 freeze date was dated 2010-06-30, with a file datestamp of 2010-06-25.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.189
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: short-chain dehydrogenase/reductase
    Species: RHODOBACTER SPHAEROIDES [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J3W2 (0-253)
      • see remark 999 (44)
      • see remark 999 (52)
      • see remark 999 (60)
      • see remark 999 (78)
      • see remark 999 (207)
    Domains in SCOPe 2.03: d2wdza_
  • Chain 'B':
    Compound: short-chain dehydrogenase/reductase
    Species: RHODOBACTER SPHAEROIDES [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J3W2 (0-253)
      • see remark 999 (44)
      • see remark 999 (52)
      • see remark 999 (60)
      • see remark 999 (78)
      • see remark 999 (207)
    Domains in SCOPe 2.03: d2wdzb_
  • Chain 'C':
    Compound: short-chain dehydrogenase/reductase
    Species: RHODOBACTER SPHAEROIDES [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J3W2 (0-253)
      • see remark 999 (44)
      • see remark 999 (52)
      • see remark 999 (60)
      • see remark 999 (78)
      • see remark 999 (207)
    Domains in SCOPe 2.03: d2wdzc_
  • Chain 'D':
    Compound: short-chain dehydrogenase/reductase
    Species: RHODOBACTER SPHAEROIDES [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J3W2 (0-253)
      • see remark 999 (44)
      • see remark 999 (52)
      • see remark 999 (60)
      • see remark 999 (78)
      • see remark 999 (207)
    Domains in SCOPe 2.03: d2wdzd_
  • Heterogens: MG, NAD, 1SP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2wdzA (A:)
mdyrtvfrldgacaavtgagsgigleicrafaasgarlilidreaaaldraaqelgaava
arivadvtdaeamtaaaaeaeavapvsilvnsagiarlhdaletddatwrqvmavnvdgm
fwasrafgramvargagaivnlgsmsgtivnrpqfassymaskgavhqltralaaewagr
gvrvnalapgyvatemtlkmrerpelfetwldmtpmgrcgepseiaaaalflaspaasyv
tgailavdggytvw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2wdzB (B:)
mdyrtvfrldgacaavtgagsgigleicrafaasgarlilidreaaaldraaqelgaava
arivadvtdaeamtaaaaeaeavapvsilvnsagiarlhdaletddatwrqvmavnvdgm
fwasrafgramvargagaivnlgsmsgtivnrpqfassymaskgavhqltralaaewagr
gvrvnalapgyvatemtlkmrerpelfetwldmtpmgrcgepseiaaaalflaspaasyv
tgailavdggytvw

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2wdzC (C:)
mdyrtvfrldgacaavtgagsgigleicrafaasgarlilidreaaaldraaqelgaava
arivadvtdaeamtaaaaeaeavapvsilvnsagiarlhdaletddatwrqvmavnvdgm
fwasrafgramvargagaivnlgsmsgtivnrpqfassymaskgavhqltralaaewagr
gvrvnalapgyvatemtlkmrerpelfetwldmtpmgrcgepseiaaaalflaspaasyv
tgailavdggytvw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2wdzD (D:)
mdyrtvfrldgacaavtgagsgigleicrafaasgarlilidreaaaldraaqelgaava
arivadvtdaeamtaaaaeaeavapvsilvnsagiarlhdaletddatwrqvmavnvdgm
fwasrafgramvargagaivnlgsmsgtivnrpqfassymaskgavhqltralaaewagr
gvrvnalapgyvatemtlkmrerpelfetwldmtpmgrcgepseiaaaalflaspaasyv
tgailavdggytvw