PDB entry 2wdt
View 2wdt on RCSB PDB site
Description: crystal structure of plasmodium falciparum uchl3 in complex with the suicide inhibitor ubvme
Class: hydrolase/protein binding
Keywords: hydrolase-protein binding complex, enzyme-ligand complex, ubiquitin isopeptidase, uch-l superfamily, cystein proteinase, peptidase_c12, hydrolase
Deposited on
2009-03-26, released
2009-12-29
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-07-13, with a file datestamp of
2011-06-02.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.188
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ubiquitin carboxyl-terminal hydrolase l3
Species: PLASMODIUM FALCIPARUM [TaxId:5833]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d2wdta_ - Chain 'B':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62988 (0-74)
- PDB 2WDT (75-75)
Domains in SCOPe 2.03: d2wdtb_ - Chain 'C':
Compound: ubiquitin carboxyl-terminal hydrolase l3
Species: PLASMODIUM FALCIPARUM [TaxId:5833]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d2wdtc_ - Chain 'D':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62988 (0-74)
- PDB 2WDT (75-75)
Domains in SCOPe 2.03: d2wdtd_ - Heterogens: CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2wdtA (A:)
makndiwtplesnpdslylyscklgqsklkfvdiygfnndlldmipqpvqaviflypvnd
nivsenntndkhnlkenfdnvwfikqyipnscgtiallhlygnlrnkfeldkdsvlddff
nkvnemsaekrgqelknnksienlhhefcgqvenrddildvdthfivfvqiegkiieldg
rkdhptvhcftngdnflydtgkiiqdkfiekckddlrfsalavipndnfdii
Sequence, based on observed residues (ATOM records): (download)
>2wdtA (A:)
diwtplesnpdslylyscklgqsklkfvdiygfnndlldmipqpvqaviflypvnfdnvw
fikqyipnscgtiallhlygnlrnkfeldkdsvlddffnkvnemsaekrgqelknnksie
nlhhefcgqvenrddildvdthfivfvqiegkiieldgrkdhptvhcftngdnflydtgk
iiqdkfiekckddlrfsalavipn
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>2wdtB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2wdtC (C:)
makndiwtplesnpdslylyscklgqsklkfvdiygfnndlldmipqpvqaviflypvnd
nivsenntndkhnlkenfdnvwfikqyipnscgtiallhlygnlrnkfeldkdsvlddff
nkvnemsaekrgqelknnksienlhhefcgqvenrddildvdthfivfvqiegkiieldg
rkdhptvhcftngdnflydtgkiiqdkfiekckddlrfsalavipndnfdii
Sequence, based on observed residues (ATOM records): (download)
>2wdtC (C:)
ndiwtplesnpdslylyscklgqsklkfvdiygfnndlldmipqpvqaviflypvnfdnv
wfikqyipnscgtiallhlygnlrnkfeldkdsvlddffnkvnemsaekrgqelknnksi
enlhhefcgqvenrddildvdthfivfvqiegkiieldgrkdhptvhcftngdnflydtg
kiiqdkfiekckddlrfsalavipnd
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>2wdtD (D:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx