PDB entry 2wdr

View 2wdr on RCSB PDB site
Description: E. coli succinate:quinone oxidoreductase (SQR) with pentachlorophenol bound
Deposited on 2009-03-25, released 2009-08-25
The last revision was dated 2015-02-04, with a file datestamp of 2015-01-30.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.199
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Succinate dehydrogenase flavoprotein subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: succinate dehydrogenase iron-sulfur subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: succinate dehydrogenase cytochrome b556 subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: succinate dehydrogenase hydrophobic membrane anchor subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Succinate dehydrogenase flavoprotein subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: succinate dehydrogenase iron-sulfur subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: succinate dehydrogenase cytochrome b556 subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: succinate dehydrogenase hydrophobic membrane anchor subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Succinate dehydrogenase flavoprotein subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: succinate dehydrogenase iron-sulfur subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: succinate dehydrogenase cytochrome b556 subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: succinate dehydrogenase hydrophobic membrane anchor subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FAD, TEO, NA, FES, SF4, F3S, HEM, PCI

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >2wdrA (A:)
mklpvrefdavvigaggagmraalqisqsgqtcallskvfptrshtvsaqggitvalgnt
hednwewhmydtvkgsdyigdqdaieymcktgpeailelehmglpfsrlddgriyqrpfg
gqsknfggeqaartaaaadrtghallhtlyqqnlknhttifsewyaldlvknqdgavvgc
talcietgevvyfkaratvlatggagriyqsttnahintgdgvgmairagvpvqdmemwq
fhptgiagagvlvtegcrgeggyllnkhgerfmeryapnakdlagrdvvarsimieireg
rgcdgpwgphaklkldhlgkevlesrlpgilelsrtfahvdpvkepipviptchymmggi
ptkvtgqaltvnekgedvvvpglfavgeiacvsvhganrlggnslldlvvfgraaglhlq
esiaeqgalrdasesdveasldrlnrwnnnrngedpvairkalqecmqhnfsvfregdam
akgleqlkvirerlknarlddtssefntqrvecleldnlmetayatavsanfrtesrgah
srfdfpdrddenwlchslylpesesmtrrsvnmepklrpafppkirty

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >2wdrB (B:)
mrlefsiyrynpdvddaprmqdytleadegrdmmlldaliqlkekdpslsfrrscregvc
gsdglnmngknglacitpisalnqpgkkivirplpglpvirdlvvdmgqfyaqyekikpy
llnngqnpparehlqmpeqrekldglyecilcaccstscpsfwwnpdkfigpagllaayr
flidsrdtetdsrldglsdafsvfrchsimncvsvcpkglnptraighiksmllqrna

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2wdrC (C:)
mirnvkkqrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeq
asaimgsffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvl
sllagvlvw

    Sequence, based on observed residues (ATOM records):
    >2wdrC (C:)
qrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeqasaimgs
ffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvlsllagvl
vw

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2wdrD (D:)
mvsnasalgrngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvf
tllalfsilihawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv

    Sequence, based on observed residues (ATOM records):
    >2wdrD (D:)
ngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvftllalfsili
hawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >2wdrE (E:)
mklpvrefdavvigaggagmraalqisqsgqtcallskvfptrshtvsaqggitvalgnt
hednwewhmydtvkgsdyigdqdaieymcktgpeailelehmglpfsrlddgriyqrpfg
gqsknfggeqaartaaaadrtghallhtlyqqnlknhttifsewyaldlvknqdgavvgc
talcietgevvyfkaratvlatggagriyqsttnahintgdgvgmairagvpvqdmemwq
fhptgiagagvlvtegcrgeggyllnkhgerfmeryapnakdlagrdvvarsimieireg
rgcdgpwgphaklkldhlgkevlesrlpgilelsrtfahvdpvkepipviptchymmggi
ptkvtgqaltvnekgedvvvpglfavgeiacvsvhganrlggnslldlvvfgraaglhlq
esiaeqgalrdasesdveasldrlnrwnnnrngedpvairkalqecmqhnfsvfregdam
akgleqlkvirerlknarlddtssefntqrvecleldnlmetayatavsanfrtesrgah
srfdfpdrddenwlchslylpesesmtrrsvnmepklrpafppkirty

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >2wdrF (F:)
mrlefsiyrynpdvddaprmqdytleadegrdmmlldaliqlkekdpslsfrrscregvc
gsdglnmngknglacitpisalnqpgkkivirplpglpvirdlvvdmgqfyaqyekikpy
llnngqnpparehlqmpeqrekldglyecilcaccstscpsfwwnpdkfigpagllaayr
flidsrdtetdsrldglsdafsvfrchsimncvsvcpkglnptraighiksmllqrna

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2wdrG (G:)
mirnvkkqrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeq
asaimgsffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvl
sllagvlvw

    Sequence, based on observed residues (ATOM records):
    >2wdrG (G:)
qrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeqasaimgs
ffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvlsllagvl
vw

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2wdrH (H:)
mvsnasalgrngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvf
tllalfsilihawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv

    Sequence, based on observed residues (ATOM records):
    >2wdrH (H:)
ngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvftllalfsili
hawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >2wdrI (I:)
mklpvrefdavvigaggagmraalqisqsgqtcallskvfptrshtvsaqggitvalgnt
hednwewhmydtvkgsdyigdqdaieymcktgpeailelehmglpfsrlddgriyqrpfg
gqsknfggeqaartaaaadrtghallhtlyqqnlknhttifsewyaldlvknqdgavvgc
talcietgevvyfkaratvlatggagriyqsttnahintgdgvgmairagvpvqdmemwq
fhptgiagagvlvtegcrgeggyllnkhgerfmeryapnakdlagrdvvarsimieireg
rgcdgpwgphaklkldhlgkevlesrlpgilelsrtfahvdpvkepipviptchymmggi
ptkvtgqaltvnekgedvvvpglfavgeiacvsvhganrlggnslldlvvfgraaglhlq
esiaeqgalrdasesdveasldrlnrwnnnrngedpvairkalqecmqhnfsvfregdam
akgleqlkvirerlknarlddtssefntqrvecleldnlmetayatavsanfrtesrgah
srfdfpdrddenwlchslylpesesmtrrsvnmepklrpafppkirty

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >2wdrJ (J:)
mrlefsiyrynpdvddaprmqdytleadegrdmmlldaliqlkekdpslsfrrscregvc
gsdglnmngknglacitpisalnqpgkkivirplpglpvirdlvvdmgqfyaqyekikpy
llnngqnpparehlqmpeqrekldglyecilcaccstscpsfwwnpdkfigpagllaayr
flidsrdtetdsrldglsdafsvfrchsimncvsvcpkglnptraighiksmllqrna

  • Chain 'K':
    Sequence, based on SEQRES records:
    >2wdrK (K:)
mirnvkkqrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeq
asaimgsffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvl
sllagvlvw

    Sequence, based on observed residues (ATOM records):
    >2wdrK (K:)
qrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeqasaimgs
ffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvlsllagvl
vw

  • Chain 'L':
    Sequence, based on SEQRES records:
    >2wdrL (L:)
mvsnasalgrngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvf
tllalfsilihawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv

    Sequence, based on observed residues (ATOM records):
    >2wdrL (L:)
ngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvftllalfsili
hawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv