PDB entry 2wdb

View 2wdb on RCSB PDB site
Description: a family 32 carbohydrate-binding module, from the mu toxin produced by clostridium perfringens, in complex with beta-d-glcnac-beta(1,2) mannose
Deposited on 2009-03-23, released 2009-05-05
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hyaluronoglucosaminidase
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WDB
      • conflict (160)
    • Uniprot P26831 (23-End)
  • Chain 'B':
    Compound: Hyaluronoglucosaminidase
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WDB (Start-22)
      • conflict (160)
    • Uniprot P26831 (23-End)
  • Chain 'C':
    Compound: Hyaluronoglucosaminidase
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WDB
      • conflict (160)
    • Uniprot P26831 (23-End)
  • Chain 'D':
    Compound: Hyaluronoglucosaminidase
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WDB (Start-22)
      • conflict (160)
    • Uniprot P26831 (23-End)
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2wdbA (A:)
mgsshhhhhhssglvprgshmasnpslirseswqvyegneanlldgddntgvwyktlngd
tslagefigldlgkeikldgirfvigkngggssdkwnkfkleysldneswttikeydktg
apagkdvieesfetpisakyirltnmeninkwltfsefaivsdelenagnkenvytntel
dllslakedvtk

    Sequence, based on observed residues (ATOM records):
    >2wdbA (A:)
npslirseswqvyegneanlldgddntgvwyktlngdtslagefigldlgkeikldgirf
vigkngggssdkwnkfkleysldneswttikeydktgapagkdvieesfetpisakyirl
tnmeninkwltfsefaivs

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2wdbB (B:)
mgsshhhhhhssglvprgshmasnpslirseswqvyegneanlldgddntgvwyktlngd
tslagefigldlgkeikldgirfvigkngggssdkwnkfkleysldneswttikeydktg
apagkdvieesfetpisakyirltnmeninkwltfsefaivsdelenagnkenvytntel
dllslakedvtk

    Sequence, based on observed residues (ATOM records):
    >2wdbB (B:)
masnpslirseswqvyegneanlldgddntgvwyktlngdtslagefigldlgkeikldg
irfvigkngggssdkwnkfkleysldneswttikeydktgapagkdvieesfetpisaky
irltnmeninkwltfsefaivsdele

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2wdbC (C:)
mgsshhhhhhssglvprgshmasnpslirseswqvyegneanlldgddntgvwyktlngd
tslagefigldlgkeikldgirfvigkngggssdkwnkfkleysldneswttikeydktg
apagkdvieesfetpisakyirltnmeninkwltfsefaivsdelenagnkenvytntel
dllslakedvtk

    Sequence, based on observed residues (ATOM records):
    >2wdbC (C:)
npslirseswqvyegneanlldgddntgvwyktlngdtslagefigldlgkeikldgirf
vigkngggssdkwnkfkleysldneswttikeydktgapagkdvieesfetpisakyirl
tnmeninkwltfsefaivsde

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2wdbD (D:)
mgsshhhhhhssglvprgshmasnpslirseswqvyegneanlldgddntgvwyktlngd
tslagefigldlgkeikldgirfvigkngggssdkwnkfkleysldneswttikeydktg
apagkdvieesfetpisakyirltnmeninkwltfsefaivsdelenagnkenvytntel
dllslakedvtk

    Sequence, based on observed residues (ATOM records):
    >2wdbD (D:)
asnpslirseswqvyegneanlldgddntgvwyktlngdtslagefigldlgkeikldgi
rfvigkngggssdkwnkfkleysldneswttikeydktgapagkdvieesfetpisakyi
rltnmeninkwltfsefaivsde