PDB entry 2wbm

View 2wbm on RCSB PDB site
Description: Crystal structure of mthSBDS, the homologue of the Shwachman-Bodian- Diamond syndrome protein in the euriarchaeon Methanothermobacter thermautotrophicus
Class: RNA binding protein
Keywords: shwachman-bodian-diamond syndrome protein, ribosome binding, conformational flexibility, RNA-binding protein, RNA binding protein
Deposited on 2009-03-02, released 2009-06-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-03-06, with a file datestamp of 2019-03-01.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribosome maturation protein sdo1 homolog
    Species: METHANOTHERMOBACTER THERMAUTOTROPHICUS [TaxId:187420]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WBM (Start-19)
      • conflict (194)
    • Uniprot O26781 (20-251)
    Domains in SCOPe 2.08: d2wbma1, d2wbma2, d2wbma3, d2wbma4
  • Chain 'B':
    Compound: ribosome maturation protein sdo1 homolog
    Species: METHANOTHERMOBACTER THERMAUTOTROPHICUS [TaxId:187420]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WBM
      • conflict (194)
    • Uniprot O26781 (20-251)
    Domains in SCOPe 2.08: d2wbmb1, d2wbmb2, d2wbmb3
  • Heterogens: GOL, SO4, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2wbmA (A:)
mgsshhhhhhssglvprgshmvsledaviarleshgerfevlvdpdlaaefrredsdvsv
edvlavqevfrdarkgdkaseeamrkvfetadplevtpvilrrgtiqltaeqrrqmiedk
rlkiinkiareainpqnglphppkriekameearvhvdpfktvdeqvnivlkairtkipi
kfekvrvaikipgemagsaygvisnfgkitneewqndgswiavveipgglqdsfyqklse
ltggnvetrlik

    Sequence, based on observed residues (ATOM records): (download) 
    >2wbmA (A:)
shmvsledaviarleshgerfevlvdpdlaaefrredsdvsvedvlavqevfrdarkgdk
aseeamrkvfetadplevtpvilrrgtiqltaeqrrqmiedkrlkiinkiareainpqng
lphppkriekameearvhvdpfktvdeqvnivlkairtkipikfekvrvaikipgemags
aygvisnfgkitneewqndgswiavveipgglqdsfyqklseltggnvetrlik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2wbmB (B:)
mgsshhhhhhssglvprgshmvsledaviarleshgerfevlvdpdlaaefrredsdvsv
edvlavqevfrdarkgdkaseeamrkvfetadplevtpvilrrgtiqltaeqrrqmiedk
rlkiinkiareainpqnglphppkriekameearvhvdpfktvdeqvnivlkairtkipi
kfekvrvaikipgemagsaygvisnfgkitneewqndgswiavveipgglqdsfyqklse
ltggnvetrlik

    Sequence, based on observed residues (ATOM records): (download) 
    >2wbmB (B:)
mvsledaviarleshgerfevlvdpdlaaefrvsvedvlavqevfrdarkgdkaseeamr
kvfetadplevtpvilrrgtiqltaeqrrqmiedkrlkiinkiareainpqnglphppkr
iekameearvhvdpfktvdeqvnivlkairtkipikfekvrvaikipgemagsaygvisn
fgkitneewqndgswiavveipgglqdsfyqklseltggnvetrlik