PDB entry 2w4i

View 2w4i on RCSB PDB site
Description: crystal structure of helicobacter pylori glutamate racemase in complex with d-glutamate and an inhibitor
Deposited on 2008-11-25, released 2008-12-09
The last revision was dated 2020-03-04, with a file datestamp of 2020-02-28.
Experiment type: XRAY
Resolution: 1.87 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glutamate racemase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: glutamate racemase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: glutamate racemase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: glutamate racemase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: DGL, VGA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >2w4iA (A:)
    mkigvfdsgvggfsvlksllkarlfdeiiyygdsarvpygtkdpttikqfglealdffkp
    heiellivacntasalaleemqkyskipivgviepsilaikrqvedknapilvlgtkati
    qsnaydnalkqqgylnishlatslfvplieesilegelletcmhyyftpleilpeviilg
    cthfpliaqkiegyfmghfalptppllihsgdaiveylqqkyalknnactfpkvefhasg
    dviwlerqakewlkl
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2w4iB (B:)
    mkigvfdsgvggfsvlksllkarlfdeiiyygdsarvpygtkdpttikqfglealdffkp
    heiellivacntasalaleemqkyskipivgviepsilaikrqvedknapilvlgtkati
    qsnaydnalkqqgylnishlatslfvplieesilegelletcmhyyftpleilpeviilg
    cthfpliaqkiegyfmghfalptppllihsgdaiveylqqkyalknnactfpkvefhasg
    dviwlerqakewlkl
    

    Sequence, based on observed residues (ATOM records):
    >2w4iB (B:)
    mkigvfdsgvggfsvlksllkarlfdeiiyygdsarvpygtkdpttikqfglealdffkp
    heiellivacntasalaleemqkyskipivgviepsilaikrqvedknapilvlgtkati
    qsnaydnalkqqgylnishlatslfvplieesilegelletcmhyyftpleilpeviilg
    cthfpliaqkiegyfmghfalptppllihsgdaiveylqqkyalknnactfpkvefhasg
    dviwlerqakewlk
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2w4iE (E:)
    mkigvfdsgvggfsvlksllkarlfdeiiyygdsarvpygtkdpttikqfglealdffkp
    heiellivacntasalaleemqkyskipivgviepsilaikrqvedknapilvlgtkati
    qsnaydnalkqqgylnishlatslfvplieesilegelletcmhyyftpleilpeviilg
    cthfpliaqkiegyfmghfalptppllihsgdaiveylqqkyalknnactfpkvefhasg
    dviwlerqakewlkl
    

    Sequence, based on observed residues (ATOM records):
    >2w4iE (E:)
    mkigvfdsgvggfsvlksllkarlfdeiiyygdsarvpygtkdpttikqfglealdffkp
    heiellivacntasalaleemqkyskipivgviepsilaikrqvedknapilvlgtkati
    qsnaydnalkqqgylnishlatslfvplieesilegelletcmhyyftpleilpeviilg
    cthfpliaqkiegyfmghfalptppllihsgdaiveylqqkyalknnactfpkvefhasg
    dviwlerqakewlk
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2w4iF (F:)
    mkigvfdsgvggfsvlksllkarlfdeiiyygdsarvpygtkdpttikqfglealdffkp
    heiellivacntasalaleemqkyskipivgviepsilaikrqvedknapilvlgtkati
    qsnaydnalkqqgylnishlatslfvplieesilegelletcmhyyftpleilpeviilg
    cthfpliaqkiegyfmghfalptppllihsgdaiveylqqkyalknnactfpkvefhasg
    dviwlerqakewlkl
    

    Sequence, based on observed residues (ATOM records):
    >2w4iF (F:)
    mkigvfdsgvggfsvlksllkarlfdeiiyygdsarvpygtkdpttikqfglealdffkp
    heiellivacntasalaleemqkyskipivgviepsilaikrqvedknapilvlgtkati
    qsnaydnalkqqgylnishlatslfvplieesilegelletcmhyyftpleilpeviilg
    cthfpliaqkiegyfmghfalptppllihsgdaiveylqqkyalknnactfpkvefhasg
    dviwlerqakewlk