PDB entry 2w42

View 2w42 on RCSB PDB site
Description: the structure of a piwi protein from archaeoglobus fulgidus complexed with a 16nt dna duplex.
Deposited on 2008-11-19, released 2008-12-09
The last revision was dated 2009-02-17, with a file datestamp of 2009-02-13.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.207
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative uncharacterized protein
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative uncharacterized protein
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 5'-d(*tp*tp*cp*gp*ap*cp*gp*cp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'Q':
    Compound: 5'-d(*gp*tp*cp*gp*ap*ap*tp*tp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'R':
    Compound: 5'-d(*tp*tp*cp*gp*ap*cp*gp*cp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'S':
    Compound: 5'-d(*gp*tp*cp*gp*ap*ap*tp*tp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Heterogens: MN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2w42A (A:)
mmeykivengltyrigngasvpisntgelikglrnygpyevpslkynqialihnnqfssl
inqlksqisskidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeynt
plyyklksylinsipsqfmrydilsnrnltfyvdnllvqfvsklggkpwilnvdpekgsd
iiigtgatridnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkks
npdwdvekltlhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwv
mgdpnnrfhpyegtkvklsskrylltllqpylkrnglemvtpikplsveivsdnwtseey
yhnvheildeiyylskmnwrgfrsrnlpvtvnypklvagiianvnryggypinpegnrsl
qtnpwfl

    Sequence, based on observed residues (ATOM records):
    >2w42A (A:)
ltyrigngasvpisntgelikglrnygpyevpslkynqialihnnqfsslinqlksqiss
kidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeyntplyyklksyl
insipsqfmrydilsnrnltfyvdnllvqfvsklggkpwilnvdpekgsdiiigtgatri
dnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkksnpdwdveklt
lhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwvmgyegtkvkl
sskrylltllqmvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgfrsrnl
pvtvnypklvagiianvnryggypirslqtnpwfl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2w42B (B:)
mmeykivengltyrigngasvpisntgelikglrnygpyevpslkynqialihnnqfssl
inqlksqisskidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeynt
plyyklksylinsipsqfmrydilsnrnltfyvdnllvqfvsklggkpwilnvdpekgsd
iiigtgatridnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkks
npdwdvekltlhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwv
mgdpnnrfhpyegtkvklsskrylltllqpylkrnglemvtpikplsveivsdnwtseey
yhnvheildeiyylskmnwrgfrsrnlpvtvnypklvagiianvnryggypinpegnrsl
qtnpwfl

    Sequence, based on observed residues (ATOM records):
    >2w42B (B:)
ltyrigngasvpisntgelikglrnygpyevpslkynqialihnnqfsslinqlksqiss
kidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeyntplyyklksyl
insipsqfmrydinltfyvdnllvqfvsklggkpwilnvdpekgsdiiigtgatridnvn
lfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkksnpdwdvekltlhvs
gkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwvmgyegtkvklsskr
ylltllqvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgfrsrnlpvtvn
ypklvagiianvnryggypislqtnpwfl

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    No sequence available.