PDB entry 2w2l

View 2w2l on RCSB PDB site
Description: crystal structure of the holo forms of rhodotorula graminis d- mandelate dehydrogenase at 2.5a.
Deposited on 2008-11-02, released 2009-11-17
The last revision was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: d-mandelate dehydrogenase
    Species: RHODOTORULA GRAMINIS [TaxId:29898]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: d-mandelate dehydrogenase
    Species: RHODOTORULA GRAMINIS [TaxId:29898]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: d-mandelate dehydrogenase
    Species: RHODOTORULA GRAMINIS [TaxId:29898]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: d-mandelate dehydrogenase
    Species: RHODOTORULA GRAMINIS [TaxId:29898]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7LLW9 (0-End)
      • conflict (72)
  • Heterogens: NAD, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2w2lA (A:)
mprprvlllgdparhlddlwsdfqqkfevipanltthdgfkqalrekrygdfeaiiklav
engtesypwnadlishlpsslkvfaaagagfdwldldalnergvafansrgagdtatsdl
alylilsvfrlasyseraartgdpetfnrvhleigksahnprghvlgavglgaiqkeiar
kavhglgmklvyydvapadaetekalgaervdsleelarrsdcvsvsvpymklthhlide
affaamkpgsrivntargpvisqdaliaalksgkllsagldvhefepqvskeliemkhvt
ltthiggvaietfheferltmtnidrfllqgkplltpagkvfapssaa

    Sequence, based on observed residues (ATOM records):
    >2w2lA (A:)
mprprvlllgdparhlddlwsdfqqkfevipanltthdgfkqalrekrygdfeaiiklav
engtesypwnadlishlpsslkvfaaagagfdwldldalnergvafansrgagdtatsdl
alylilsvfrlasyseraartgdpetfnrvhleigksahnprghvlgavglgaiqkeiar
kavhglgmklvyydvapadaetekalgaervdsleelarrsdcvsvsvpymklthhlide
affaamkpgsrivntargpvisqdaliaalksgkllsagldvhefepqvskeliemkhvt
ltthiggvaietfheferltmtnidrfllqgkplltpagkvfapss

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2w2lB (B:)
mprprvlllgdparhlddlwsdfqqkfevipanltthdgfkqalrekrygdfeaiiklav
engtesypwnadlishlpsslkvfaaagagfdwldldalnergvafansrgagdtatsdl
alylilsvfrlasyseraartgdpetfnrvhleigksahnprghvlgavglgaiqkeiar
kavhglgmklvyydvapadaetekalgaervdsleelarrsdcvsvsvpymklthhlide
affaamkpgsrivntargpvisqdaliaalksgkllsagldvhefepqvskeliemkhvt
ltthiggvaietfheferltmtnidrfllqgkplltpagkvfapssaa

    Sequence, based on observed residues (ATOM records):
    >2w2lB (B:)
prprvlllgdparhlddlwsdfqqkfevipanltthdgfkqalrekrygdfeaiiklave
ngtesypwnadlishlpsslkvfaaagagfdwldldalnergvafansrgagdtatsdla
lylilsvfrlasyseraartgdpetfnrvhleigksahnprghvlgavglgaiqkeiark
avhglgmklvyydvapadaetekalgaervdsleelarrsdcvsvsvpymklthhlidea
ffaamkpgsrivntargpvisqdaliaalksgkllsagldvhefepqvskeliemkhvtl
tthiggvaietfheferltmtnidrfllqgkplltpagkvfapss

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2w2lC (C:)
mprprvlllgdparhlddlwsdfqqkfevipanltthdgfkqalrekrygdfeaiiklav
engtesypwnadlishlpsslkvfaaagagfdwldldalnergvafansrgagdtatsdl
alylilsvfrlasyseraartgdpetfnrvhleigksahnprghvlgavglgaiqkeiar
kavhglgmklvyydvapadaetekalgaervdsleelarrsdcvsvsvpymklthhlide
affaamkpgsrivntargpvisqdaliaalksgkllsagldvhefepqvskeliemkhvt
ltthiggvaietfheferltmtnidrfllqgkplltpagkvfapssaa

    Sequence, based on observed residues (ATOM records):
    >2w2lC (C:)
prprvlllgdparhlddlwsdfqqkfevipanltthdgfkqalrekrygdfeaiiklave
ngtesypwnadlishlpsslkvfaaagagfdwldldalnergvafansrgagdtatsdla
lylilsvfrlasyseraartgdpetfnrvhleigksahnprghvlgavglgaiqkeiark
avhglgmklvyydvapadaetekalgaervdsleelarrsdcvsvsvpymklthhlidea
ffaamkpgsrivntargpvisqdaliaalksgkllsagldvhefepqvskeliemkhvtl
tthiggvaietfheferltmtnidrfllqgkplltpagkvfaps

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2w2lD (D:)
mprprvlllgdparhlddlwsdfqqkfevipanltthdgfkqalrekrygdfeaiiklav
engtesypwnadiishlpsslkvfaaagagfdwldldalnergvafansrgagdtatsdl
alylilsvfrlasyseraartgdpetfnrvhleigksahnprghvlgavglgaiqkeiar
kavhglgmklvyydvapadaetekalgaervdsleelarrsdcvsvsvpymklthhlide
affaamkpgsrivntargpvisqdaliaalksgkllsagldvhefepqvskeliemkhvt
ltthiggvaietfheferltmtnidrfllqgkplltpagkvfapssaa

    Sequence, based on observed residues (ATOM records):
    >2w2lD (D:)
mprprvlllgdparhlddlwsdfqqkfevipanltthdgfkqalrekrygdfeaiiklav
engtesypwnadiishlpsslkvfaaagagfdwldldalnergvafansrgagdtatsdl
alylilsvfrlasyseraartgdpetfnrvhleigksahnprghvlgavglgaiqkeiar
kavhglgmklvyydvapadaetekalgaervdsleelarrsdcvsvsvpymklthhlide
affaamkpgsrivntargpvisqdaliaalksgkllsagldvhefepqvskeliemkhvt
ltthiggvaietfheferltmtnidrfllqgkplltpagkvfaps