PDB entry 2vzx

View 2vzx on RCSB PDB site
Description: structural and spectroscopic characterization of photoconverting fluorescent protein dendra2
Class: fluorescent protein
Keywords: fluorescent protein, photoactivation, gfp-like protein, dendra2
Deposited on 2008-08-06, released 2009-06-09
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-06-09, with a file datestamp of 2009-06-05.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.21517
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Green fluorescent protein
    Species: DENDRONEPHTHYA SP. SSAL-2002 [TaxId:191210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8T6U0 (Start-224)
      • conflict (39)
      • conflict (60)
      • conflict (94)
      • conflict (120)
      • conflict (122)
      • conflict (187)
      • conflict (198)
      • conflict (212)
      • conflict (223)
      • chromophore (63)
    • PDB 2VZX
    Domains in SCOPe 2.01: d2vzxa_
  • Chain 'B':
    Compound: Green fluorescent protein
    Species: DENDRONEPHTHYA SP. SSAL-2002 [TaxId:191210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8T6U0 (Start-224)
      • conflict (39)
      • conflict (60)
      • conflict (94)
      • conflict (120)
      • conflict (122)
      • conflict (187)
      • conflict (198)
      • conflict (212)
      • conflict (223)
      • chromophore (63)
    • PDB 2VZX (225-End)
    Domains in SCOPe 2.01: d2vzxb_
  • Chain 'C':
    Compound: Green fluorescent protein
    Species: DENDRONEPHTHYA SP. SSAL-2002 [TaxId:191210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8T6U0 (Start-224)
      • conflict (39)
      • conflict (60)
      • conflict (94)
      • conflict (120)
      • conflict (122)
      • conflict (187)
      • conflict (198)
      • conflict (212)
      • conflict (223)
      • chromophore (63)
    • PDB 2VZX (225-End)
    Domains in SCOPe 2.01: d2vzxc_
  • Chain 'D':
    Compound: Green fluorescent protein
    Species: DENDRONEPHTHYA SP. SSAL-2002 [TaxId:191210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8T6U0 (Start-224)
      • conflict (39)
      • conflict (60)
      • conflict (94)
      • conflict (120)
      • conflict (122)
      • conflict (187)
      • conflict (198)
      • conflict (212)
      • conflict (223)
      • chromophore (63)
    • PDB 2VZX
    Domains in SCOPe 2.01: d2vzxd_
  • Chain 'E':
    Compound: Green fluorescent protein
    Species: DENDRONEPHTHYA SP. SSAL-2002 [TaxId:191210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8T6U0 (Start-224)
      • conflict (39)
      • conflict (60)
      • conflict (94)
      • conflict (120)
      • conflict (122)
      • conflict (187)
      • conflict (198)
      • conflict (212)
      • conflict (223)
      • chromophore (63)
    • PDB 2VZX (225-End)
    Domains in SCOPe 2.01: d2vzxe_
  • Chain 'F':
    Compound: Green fluorescent protein
    Species: DENDRONEPHTHYA SP. SSAL-2002 [TaxId:191210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8T6U0 (Start-224)
      • conflict (39)
      • conflict (60)
      • conflict (94)
      • conflict (120)
      • conflict (122)
      • conflict (187)
      • conflict (198)
      • conflict (212)
      • conflict (223)
      • chromophore (63)
    • PDB 2VZX
    Domains in SCOPe 2.01: d2vzxf_
  • Chain 'G':
    Compound: Green fluorescent protein
    Species: DENDRONEPHTHYA SP. SSAL-2002 [TaxId:191210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8T6U0 (Start-224)
      • conflict (39)
      • conflict (60)
      • conflict (94)
      • conflict (120)
      • conflict (122)
      • conflict (187)
      • conflict (198)
      • conflict (212)
      • conflict (223)
      • chromophore (63)
    • PDB 2VZX
    Domains in SCOPe 2.01: d2vzxg_
  • Chain 'H':
    Compound: Green fluorescent protein
    Species: DENDRONEPHTHYA SP. SSAL-2002 [TaxId:191210]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8T6U0 (Start-224)
      • conflict (39)
      • conflict (60)
      • conflict (94)
      • conflict (120)
      • conflict (122)
      • conflict (187)
      • conflict (198)
      • conflict (212)
      • conflict (223)
      • chromophore (63)
    • PDB 2VZX (225-230)
    Domains in SCOPe 2.01: d2vzxh_
  • Heterogens: PG4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vzxA (A:)
mnlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydiltta
vhygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrf
kgtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykak
kvvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2vzxA (A:)
likedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydilttavh
ygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrfkg
tnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykakkv
vqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vzxB (B:)
mnlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydiltta
vhygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrf
kgtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykak
kvvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2vzxB (B:)
likedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydilttavh
ygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrfkg
tnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykakkv
vqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2vzxC (C:)
mnlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydiltta
vhygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrf
kgtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykak
kvvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2vzxC (C:)
nlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydilttav
hygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrfk
gtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykakk
vvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2vzxD (D:)
mnlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydiltta
vhygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrf
kgtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykak
kvvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2vzxD (D:)
nlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydilttav
hygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrfk
gtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykakk
vvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvw

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2vzxE (E:)
mnlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydiltta
vhygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrf
kgtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykak
kvvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2vzxE (E:)
likedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydilttavh
ygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrfkg
tnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykakkv
vqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhh

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2vzxF (F:)
mnlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydiltta
vhygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrf
kgtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykak
kvvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2vzxF (F:)
likedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydilttavh
ygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrfkg
tnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykakkv
vqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvw

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2vzxG (G:)
mnlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydiltta
vhygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrf
kgtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykak
kvvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2vzxG (G:)
likedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydilttavh
ygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrfkg
tnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykakkv
vqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvw

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2vzxH (H:)
mnlikedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydiltta
vhygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrf
kgtnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykak
kvvqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2vzxH (H:)
likedmrvkvhmegnvnghafviegegkgkpyegtqtanltvkegaplpfsydilttavh
ygnrvftkypedipdyfkqsfpegyswertmtfedkgictirsdislegdcffqnvrfkg
tnfppngpvmqkktlkwepsteklhvrdgllvgninmallleggghylcdfkttykakkv
vqlpdahfvdhrieilgndsdynkvklyehavarysplpsqvwhhhhhh