PDB entry 2vzm

View 2vzm on RCSB PDB site
Description: crystal structure of the narbomycin-bound pikc d50n mutant
Class: oxidoreductase
Keywords: oxidoreductase, pikc, iron, heme, cyp107l1, monooxygenase, antibiotic biosynthesis, macrolide monooxygenase, metal-binding, cytochrome p450
Deposited on 2008-08-01, released 2008-08-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-03-03, with a file datestamp of 2009-02-27.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.16974
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cytochrome p450 monooxygenase
    Species: STREPTOMYCES VENEZUELAE [TaxId:54571]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VZM
      • engineered mutation (69)
    • Uniprot O87605
    Domains in SCOPe 2.07: d2vzma_
  • Chain 'B':
    Compound: cytochrome p450 monooxygenase
    Species: STREPTOMYCES VENEZUELAE [TaxId:54571]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VZM
      • engineered mutation (69)
    • Uniprot O87605
    Domains in SCOPe 2.07: d2vzmb_
  • Heterogens: HEM, NRB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2vzmA (A:)
    mgsshhhhhhssglvprgshmrrtqqgttasppvldlgalgqdfaadpyptyarlraegp
    ahrvrtpegnevwlvvgydraravladprfskdwrnsttplteaeaalnhnmlesdpprh
    trlrklvareftmrrvellrprvqeivdglvdamlaapdgradlmeslawplpitvisel
    lgvpepdraafrvwtdafvfpddpaqaqtamaemsgylsrlidskrgqdgedllsalvrt
    sdedgsrltseellgmahillvaghettvnliangmyallshpdqlaalradmtlldgav
    eemlryegpvesatyrfpvepvdldgtvipagdtvlvvladahrtperfpdphrfdirrd
    taghlafghgihfcigaplarleariavrallercpdlaldvspgelvwypnpmirglka
    lpirwrrgreagrrtg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vzmA (A:)
    ppvldlgalgqdfaadpyptyarlraegpahrvrtpegnevwlvvgydraravladprfs
    kdwrnsttplteaeaalnhnmlesdpprhtrlrklvareftmrrvellrprvqeivdglv
    damlaapdgradlmeslawplpitvisellgvpepdraafrvwtdafvfpddpaqaqtam
    aemsgylsrlidskrgqdgedllsalvrtsdedgsrltseellgmahillvaghettvnl
    iangmyallshpdqlaalradmtlldgaveemlryegpvesatyrfpvepvdldgtvipa
    gdtvlvvladahrtperfpdphrfdirrdtaghlafghgihfcigaplarleariavral
    lercpdlaldvspgelvwypnpmirglkalpirwr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2vzmB (B:)
    mgsshhhhhhssglvprgshmrrtqqgttasppvldlgalgqdfaadpyptyarlraegp
    ahrvrtpegnevwlvvgydraravladprfskdwrnsttplteaeaalnhnmlesdpprh
    trlrklvareftmrrvellrprvqeivdglvdamlaapdgradlmeslawplpitvisel
    lgvpepdraafrvwtdafvfpddpaqaqtamaemsgylsrlidskrgqdgedllsalvrt
    sdedgsrltseellgmahillvaghettvnliangmyallshpdqlaalradmtlldgav
    eemlryegpvesatyrfpvepvdldgtvipagdtvlvvladahrtperfpdphrfdirrd
    taghlafghgihfcigaplarleariavrallercpdlaldvspgelvwypnpmirglka
    lpirwrrgreagrrtg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vzmB (B:)
    pvldlgalgqdfaadpyptyarlraegpahrvrtpegnevwlvvgydraravladprfsk
    dwrnsttplteaeaalnhnmlesdpprhtrlrklvareftmrrvellrprvqeivdglvd
    amlaapdgradlmeslawplpitvisellgvpepdraafrvwtdafvfpddpaqaqtama
    emsgylsrlidskrgqdgedllsalvrtsdedgsrltseellgmahillvaghettvnli
    angmyallshpdqlaalradmtlldgaveemlryegpvesatyrfpvepvdldgtvipag
    dtvlvvladahrtperfpdphrfdirrdtaghlafghgihfcigaplarleariavrall
    ercpdlaldvspgelvwypnpmirglkalpirwr