PDB entry 2vvp

View 2vvp on RCSB PDB site
Description: crystal structure of mycobacterium tuberculosis ribose-5-phosphate isomerase b in complex with its substrates ribose 5-phosphate and ribulose 5-phosphate
Class: isomerase
Keywords: rpib, rv2465c, isomerase, rare sugar, carbohydrate metabolism, pentose phosphate pathway
Deposited on 2008-06-10, released 2008-07-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: 0.168
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribose-5-phosphate isomerase b
    Species: Mycobacterium tuberculosis [TaxId:83332]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vvpa_
  • Chain 'B':
    Compound: ribose-5-phosphate isomerase b
    Species: Mycobacterium tuberculosis [TaxId:83332]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vvpb_
  • Chain 'C':
    Compound: ribose-5-phosphate isomerase b
    Species: Mycobacterium tuberculosis [TaxId:83332]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vvpc_
  • Chain 'D':
    Compound: ribose-5-phosphate isomerase b
    Species: Mycobacterium tuberculosis [TaxId:83332]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vvpd_
  • Chain 'E':
    Compound: ribose-5-phosphate isomerase b
    Species: Mycobacterium tuberculosis [TaxId:83332]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vvpe_
  • Heterogens: R52, 5RP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vvpA (A:)
msgmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvad
pgslgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaea
laivdafvttpwskaqrhqrridilaeyertheappvpgapa

    Sequence, based on observed residues (ATOM records): (download) 
    >2vvpA (A:)
gmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvadpg
slgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaeala
ivdafvttpwskaqrhqrridilaeyertheappvpg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vvpB (B:)
msgmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvad
pgslgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaea
laivdafvttpwskaqrhqrridilaeyertheappvpgapa

    Sequence, based on observed residues (ATOM records): (download) 
    >2vvpB (B:)
sgmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvadp
gslgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaeal
aivdafvttpwskaqrhqrridilaeyertheappvp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2vvpC (C:)
msgmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvad
pgslgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaea
laivdafvttpwskaqrhqrridilaeyertheappvpgapa

    Sequence, based on observed residues (ATOM records): (download) 
    >2vvpC (C:)
gmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvadpg
slgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaeala
ivdafvttpwskaqrhqrridilaeyertheappvpga

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2vvpD (D:)
msgmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvad
pgslgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaea
laivdafvttpwskaqrhqrridilaeyertheappvpgapa

    Sequence, based on observed residues (ATOM records): (download) 
    >2vvpD (D:)
sgmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvadp
gslgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaeal
aivdafvttpwskaqrhqrridilaeyertheappvp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2vvpE (E:)
msgmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvad
pgslgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaea
laivdafvttpwskaqrhqrridilaeyertheappvpgapa

    Sequence, based on observed residues (ATOM records): (download) 
    >2vvpE (E:)
gmrvylgadhagyelkqriiehlkqtghepidcgalrydadddypafciaaatrtvadpg
slgivlggsgngeqiaankvpgarcalawsvqtaalarehnnaqligiggrmhtvaeala
ivdafvttpwskaqrhqrridilaeyertheappvpga