PDB entry 2vug

View 2vug on RCSB PDB site
Description: the structure of an archaeal homodimeric rna ligase
Deposited on 2008-05-26, released 2008-06-03
The last revision was dated 2018-02-28, with a file datestamp of 2018-02-23.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: pab1020
    Species: PYROCOCCUS ABYSSI GE5 [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VUG
    • Uniprot Q9UYG2 (Start-388)
  • Chain 'B':
    Compound: pab1020
    Species: PYROCOCCUS ABYSSI GE5 [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VUG
    • Uniprot Q9UYG2 (Start-388)
  • Heterogens: ANP, MPD, MRD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vugA (A:)
    mhhhhhhmkevvssvykeilvklgltedrietlemkggiiedefdgiryvrfkdsagklr
    rgtvvideeyvipgfphikriinlrsgirrifkrgefyveekvdgynvrvvmykgkmlgi
    trggficpftteripdfvpqeffkdnpnlilvgemagpespylvegppyvkediqfflfd
    vqeiktgrslpveerlkiaeeyginhvevfgkytkddvdelyqlierlskegregiimks
    pdmkkivkyvtpyanindikigarvfyelppgyftsrisrlafylaekrikgeefervak
    elgsallqpfvesifdveqeedihelfkvrvkrietaykmvthfeklglkieivdieeik
    dgwritfkrlypdatneireliggkafvd
    

    Sequence, based on observed residues (ATOM records):
    >2vugA (A:)
    keilvklgltedrietlemkggiiedefdgiryvrfkdsagklrrgtvvideeyvipgfp
    hikriinlrsgirrifkrgefyveekvdgynvrvvmykgkmlgitrggficpftteripd
    fvpqeffkdnpnlilvgemagpespylvegppyvkediqfflfdvqeiktgrslpveerl
    kiaeeyginhvevfgkytkddvdelyqlierlskegregiimkspdmkkivkyvtpyani
    ndikigarvfyelppgyftsrisrlafylaekrikgeefervakelgsallqpfvesifd
    veqeedihelfkvrvkrietaykmvthfeklglkieivdieeikdgwritfkrlypdatn
    eireliggkafvd
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vugB (B:)
    mhhhhhhmkevvssvykeilvklgltedrietlemkggiiedefdgiryvrfkdsagklr
    rgtvvideeyvipgfphikriinlrsgirrifkrgefyveekvdgynvrvvmykgkmlgi
    trggficpftteripdfvpqeffkdnpnlilvgemagpespylvegppyvkediqfflfd
    vqeiktgrslpveerlkiaeeyginhvevfgkytkddvdelyqlierlskegregiimks
    pdmkkivkyvtpyanindikigarvfyelppgyftsrisrlafylaekrikgeefervak
    elgsallqpfvesifdveqeedihelfkvrvkrietaykmvthfeklglkieivdieeik
    dgwritfkrlypdatneireliggkafvd
    

    Sequence, based on observed residues (ATOM records):
    >2vugB (B:)
    keilvklgltedrietlemkggiiedefdgiryvrfkdsagklrrgtvvideeyvipgfp
    hikriinlrsgirrifkrgefyveekvdgynvrvvmykgkmlgitrggficpftteripd
    fvpqeffkdnpnlilvgemagpespylvegppyvkediqfflfdvqeiktgrslpveerl
    kiaeeyginhvevfgkytkddvdelyqlierlskegregiimkspdmkkivkyvtpyani
    ndikigarvfyelppgyftsrisrlafylaekrikgeefervakelgsallqpfvesifd
    veqeedihelfkvrvkrietaykmvthfeklglkieivdieeikdgwritfkrlypdatn
    eireliggkafvd