PDB entry 2vtb

View 2vtb on RCSB PDB site
Description: structure of cryptochrome 3 - dna complex
Deposited on 2008-05-13, released 2009-06-02
The last revision was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 2.01 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cryptochrome dash
    Species: Arabidopsis thaliana [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: cryptochrome dash
    Species: Arabidopsis thaliana [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q84KJ5 (445-End)
      • conflict (353)
  • Chain 'C':
    Compound: cryptochrome dash
    Species: Arabidopsis thaliana [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: cryptochrome dash
    Species: Arabidopsis thaliana [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: cryptochrome dash
    Species: Arabidopsis thaliana [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: cryptochrome dash
    Species: Arabidopsis thaliana [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 5'-d(*dt*dt*dt*dt*dtp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'H':
    Compound: 5'-d(*dt*dt*dt*dt*dtp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'I':
    Compound: 5'-d(*dt*dt*dt*dt*dtp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'J':
    Compound: 5'-d(*dt*dt*dt*dt*dtp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'K':
    Compound: 5'-d(*dt*dt*dt*dt*dtp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'L':
    Compound: 5'-d(*dt*dt*dt*dt*dtp)-3'
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Heterogens: FAD, MHF, CL, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vtbA (A:)
mndhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndaly
kawsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllir
sgkpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyh
kddlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvep
qevtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisp
rfiyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqd
qklfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetc
lldydpcsnygnwtygagvgndpredryfsipkqaqnydpegeyvafwlqqlrrlpkekr
hwpgrlmymdtvvplkhgngpmaggsksgggfrgshsgrrsrhngp

    Sequence, based on observed residues (ATOM records):
    >2vtbA (A:)
mndhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndaly
kawsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllir
sgkpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyh
kddlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvep
qevtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisp
rfiyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqd
qklfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetc
lldydpcsnygnwtygagvgndpredryfsipkqaqnydpegeyvafwlqqlrrlpkekr
hwpgrlmymdtvvplkhgng

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vtbB (B:)
mndhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndaly
kawsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllir
sgkpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyh
kddlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvep
qevtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisp
rfiyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvngkwsqd
qklfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetc
lldydpcsnygnwtygagvndpredryfsipkqaqnydpegeyvafwlqqlrrlpkekrh
wpgrlmymdtvvplkhgngpmaggsksgggfrgshsgrrsrhngp

    Sequence, based on observed residues (ATOM records):
    >2vtbB (B:)
dhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndalyka
wsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllirsg
kpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyhkd
dlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvepqe
vtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisprf
iyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvngkwsqdqk
lfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetcll
dydpcsnygnwtygagvndpryfsipkqaqnydpegeyvafwlqqlrrlpkekrhwpgrl
mymdtvvplkh

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vtbC (C:)
mndhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndaly
kawsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllir
sgkpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyh
kddlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvep
qevtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisp
rfiyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqd
qklfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetc
lldydpcsnygnwtygagvgndpredryfsipkqaqnydpegeyvafwlqqlrrlpkekr
hwpgrlmymdtvvplkhgngpmaggsksgggfrgshsgrrsrhngp

    Sequence, based on observed residues (ATOM records):
    >2vtbC (C:)
hihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndalykaw
sssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllirsgk
peeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyhkdd
lpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvepqev
trgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisprfi
yeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqdqkl
feswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetclld
ydpcsnygnwtygagvgndpredryfsipkqaqnydpegeyvafwlqqlrrlpkekrhwp
grlmymdtvvplkhg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vtbD (D:)
mndhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndaly
kawsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllir
sgkpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyh
kddlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvep
qevtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisp
rfiyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqd
qklfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetc
lldydpcsnygnwtygagvgndpredryfsipkqaqnydpegeyvafwlqqlrrlpkekr
hwpgrlmymdtvvplkhgngpmaggsksgggfrgshsgrrsrhngp

    Sequence, based on observed residues (ATOM records):
    >2vtbD (D:)
dhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndalyka
wsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllirsg
kpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyhkd
dlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvepqe
vtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisprf
iyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqdqk
lfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetcll
dydpcsnygnwtygagvgndpredryfsipkqaqnydpegeyvafwlqqlrrlmymdtvv
plkh

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2vtbE (E:)
mndhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndaly
kawsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllir
sgkpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyh
kddlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvep
qevtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisp
rfiyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqd
qklfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetc
lldydpcsnygnwtygagvgndpredryfsipkqaqnydpegeyvafwlqqlrrlpkekr
hwpgrlmymdtvvplkhgngpmaggsksgggfrgshsgrrsrhngp

    Sequence, based on observed residues (ATOM records):
    >2vtbE (E:)
dhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndalyka
wsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllirsg
kpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyhkd
dlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvepqe
vtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisprf
iyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqdqk
lfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetcll
dydpcsnygnwtygagvgndpredryfsipkqaqnydpegeyvafwlqqlrrlpkekrhw
pgrlmymdtvvplkhg

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2vtbF (F:)
mndhihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndaly
kawsssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllir
sgkpeeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyh
kddlpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvep
qevtrgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisp
rfiyeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqd
qklfeswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetc
lldydpcsnygnwtygagvgndpredryfsipkqaqnydpegeyvafwlqqlrrlpkekr
hwpgrlmymdtvvplkhgngpmaggsksgggfrgshsgrrsrhngp

    Sequence, based on observed residues (ATOM records):
    >2vtbF (F:)
hihrvpalteeeidsvaiktferyalpssssvkrkgkgvtilwfrndlrvldndalykaw
sssdtilpvycldprlfhtthffnfpktgalrggflmeclvdlrknlmkrglnllirsgk
peeilpslakdfgartvfahketcseevdverlvnqglkrvgnstkleliwgstmyhkdd
lpfdvfdlpdvytqfrksveakcsirsstriplslgptpsvddwgdvptleklgvepqev
trgmrfvggesagvgrvfeyfwkkdllkvyketrngmlgpdystkfspwlafgcisprfi
yeevqryekervannstywvlfeliwrdyfrflsikcgnslfhlggprnvqgkwsqdqkl
feswrdaktgyplidanmkelsttgfmsnrgrqivcsflvrdmgldwrmgaewfetclld
ydpcsnygnwtygagvgndpryfsipkqaqnydpegeyvafwlqqlrrlmymdtvvplkh

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.