PDB entry 2vsn

View 2vsn on RCSB PDB site
Description: structure and topological arrangement of an o-glcnac transferase homolog: insight into molecular control of intracellular glycosylation
Class: transferase
Keywords: glycosyl transferase, n- acetylglucosamine, tpr, ogt, glcnac, o-glycosylation, transferase
Deposited on 2008-04-28, released 2008-06-10
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-03-16, with a file datestamp of 2011-03-11.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: 0.241
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: xcogt
    Species: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS [TaxId:314565]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4URB5 (Start-567)
      • engineered mutation (289)
    Domains in SCOPe 2.07: d2vsna1, d2vsna2
  • Chain 'B':
    Compound: xcogt
    Species: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS [TaxId:314565]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4URB5 (Start-567)
      • engineered mutation (289)
    Domains in SCOPe 2.07: d2vsnb1, d2vsnb2
  • Heterogens: UDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2vsnA (A:)
    mtadgprellqlraavrhrpqdfvawlmladaelgmgdttagemavqrglalhpghpeav
    arlgrvrwtqqrhaeaavllqqasdaapehpgialwlghaledagqaeaaaaaytrahql
    lpeepyitaqllnwrrrlcdwraldvlsaqvraavaqgvgavepfaflsedasaaeqlac
    artraqaiaasvrplaptrvrskgplrvgfvsngfgahptglltvalfealqrrqpdlqm
    hlfatsgddgstlrtrlaqastlhdvtalghlatakhirhhgidllfdlagwggggrpev
    falrpapvqvnwlaypgtsgapwmdyvlgdafalppalepfysehvlrlqgafqpsdtsr
    vvaeppsrtqcglpeqgvvlccfnnsyklnpqsmarmlavlrevpdsvlwllsgpgeada
    rlrafahaqgvdaqrlvfmpklphpqylaryrhadlfldthpynahttasdalwtgcpvl
    ttpgetfaarvagslnhhlgldemnvaddaafvakavalasdpaaltalharvdvlrras
    gvfhmdgfaddfgallqalarrhgwlgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vsnA (A:)
    awlmladaelgdttagemavqrpeavarlgrvrwtqqrhaeaavllqqasdaapehpgia
    lwlghaledagqaeaaaaaytrahqllpeepyitaqllnwrrrlcdwraldvlsaqvraa
    vaqgvgavepfaflsedasaaeqlacartraqaiaasvrplaptrvrskgplrvgfvsng
    fgahptglltvalfealqrrqpdlqmhlfatsgddgstlrtrlaqastlhdvtalghlat
    akhirhhgidllfdlagwggggrpevfalrpapvqvnwlaypgtsgapwmdyvlgdafal
    ppalepfysehvlrlqgafqpsdtsrvvaeppsrtqcglpeqgvvlccfnnsyklnpqsm
    armlavlrevpdsvlwllsgpgeadarlrafahaqgvdaqrlvfmpklphpqylaryrha
    dlfldthpynahttasdalwtgcpvlttpgetfaarvagslnhhlgldemnvaddaafva
    kavalasdpaaltalharvdvlrrasgvfhmdgfaddfgallqalarrhgwlgi
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2vsnB (B:)
    mtadgprellqlraavrhrpqdfvawlmladaelgmgdttagemavqrglalhpghpeav
    arlgrvrwtqqrhaeaavllqqasdaapehpgialwlghaledagqaeaaaaaytrahql
    lpeepyitaqllnwrrrlcdwraldvlsaqvraavaqgvgavepfaflsedasaaeqlac
    artraqaiaasvrplaptrvrskgplrvgfvsngfgahptglltvalfealqrrqpdlqm
    hlfatsgddgstlrtrlaqastlhdvtalghlatakhirhhgidllfdlagwggggrpev
    falrpapvqvnwlaypgtsgapwmdyvlgdafalppalepfysehvlrlqgafqpsdtsr
    vvaeppsrtqcglpeqgvvlccfnnsyklnpqsmarmlavlrevpdsvlwllsgpgeada
    rlrafahaqgvdaqrlvfmpklphpqylaryrhadlfldthpynahttasdalwtgcpvl
    ttpgetfaarvagslnhhlgldemnvaddaafvakavalasdpaaltalharvdvlrras
    gvfhmdgfaddfgallqalarrhgwlgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vsnB (B:)
    vawlmladaelgagemavqrglpeavarlgrvrwtqqrhaeaavllqqasdaapehpgia
    lwlghaledagqaeaaaaaytrahqllpeepyitaqllnwrrrlcdwraldvlsaqvraa
    vaqgvgavepfaflsedasaaeqlacartraqaiaasvrplaptrvrskgplrvgfvsng
    fgahptglltvalfealqrrqpdlqmhlfatsgddgstlrtrlaqastlhdvtalghlat
    akhirhhgidllfdlagwggggrpevfalrpapvqvnwlaypgtsgapwmdyvlgdafal
    ppalepfysehvlrlqgafqpsdtsrvvaeppsrtqcglpeqgvvlccfnnsyklnpqsm
    armlavlrevpdsvlwllsgpgeadarlrafahaqgvdaqrlvfmpklphpqylaryrha
    dlfldthpynahttasdalwtgcpvlttpgetfaarvagslnhhlgldemnvaddaafva
    kavalasdpaaltalharvdvlrrasgvfhmdgfaddfgallqalarrhgwlgi