PDB entry 2vsk

View 2vsk on RCSB PDB site
Description: hendra virus attachment glycoprotein in complex with human cell surface receptor ephrinb2
Deposited on 2008-04-24, released 2008-05-20
The last revision was dated 2018-02-28, with a file datestamp of 2018-02-23.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin-neuraminidase
    Species: HENDRA VIRUS, synthetic [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: ephrin-b2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: hemagglutinin-neuraminidase
    Species: HENDRA VIRUS, synthetic [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: ephrin-b2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vskA (A:)
    iclqkttstilkprlisytlpintregvcitdpllavdngffayshlekigsctrgiakq
    riigvgevldrgdkvpsmfmtnvwtppnpstihhcsstyhedfyytlcavshvgdpilns
    tswteslslirlavrpksdsgdynqkyiaitkvergkydkvmpygpsgikqgdtlyfpav
    gflprtefqyndsncpiihckyskaencrlsmgvnskshyilrsgllkynlslggdiilq
    fieiadnrltigspskiynslgqpvfyqasyswdtmiklgdvdtvdplrvqwrnnsvisr
    pgqsqcprfnvcpevcwegtyndaflidrlnwvsagvylnsnqtaenpvfavfkdneily
    qvplaeddtnaqktitdcfllenviwcislveiydtgdsvirpklfavkipaqcse
    

    Sequence, based on observed residues (ATOM records):
    >2vskA (A:)
    iclqkttstilkprlisegvcitdpllavdngffayshlekigsctrgiakqriigvgev
    ldrgdkvpsmfmtnvwtppnpstihhcsstyhedfyytlcavshvgdpilnstswtesls
    lirlavrpdynqkyiaitkvergkydkvmpygpsgikqgdtlyfpavgflprtefqynds
    ncpiihckyskaencrlsmgvnskshyilrsgllkynlsliilqfieiadnrltigspsk
    iynslgqpvfyqasyswdtmiklgdvdtvdplrvqwrnnsvisrpgqsqcprfnvcpevc
    wegtyndaflidrlnwvsagvylnsnqtaenpvfavfkdneilyqvplaeddtnaqktit
    dcfllenviwcislveiydtgdsvirpklfavkipaqcse
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vskB (B:)
    ivlepiywnssnskflpgqglvlypqigdkldiicpkvdsktvgqyeyykvymvdkdqad
    rctikkentpllncakpdqdikftikfqefspnlwglefqknkdyyiistsngslegldn
    qeggvcqtramkilmkvg
    

    Sequence, based on observed residues (ATOM records):
    >2vskB (B:)
    ivlepiywnssnskflpgqglvlypqigdkldiicpkvyeyykvymvdkdqadrctikke
    ntpllncakpdqdikftikfqefspnlwglefqknkdyyiistsngslegldnqeggvcq
    tramkilmkvg
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vskC (C:)
    iclqkttstilkprlisytlpintregvcitdpllavdngffayshlekigsctrgiakq
    riigvgevldrgdkvpsmfmtnvwtppnpstihhcsstyhedfyytlcavshvgdpilns
    tswteslslirlavrpksdsgdynqkyiaitkvergkydkvmpygpsgikqgdtlyfpav
    gflprtefqyndsncpiihckyskaencrlsmgvnskshyilrsgllkynlslggdiilq
    fieiadnrltigspskiynslgqpvfyqasyswdtmiklgdvdtvdplrvqwrnnsvisr
    pgqsqcprfnvcpevcwegtyndaflidrlnwvsagvylnsnqtaenpvfavfkdneily
    qvplaeddtnaqktitdcfllenviwcislveiydtgdsvirpklfavkipaqcse
    

    Sequence, based on observed residues (ATOM records):
    >2vskC (C:)
    iclqkttstilkprlisegvcitdpllavdngffayshlekigsctrgiakqriigvgev
    ldrgdkvpsmfmtnvwtppnpstihhcsstyhedfyytlcavshvgdpilnstswtesls
    lirlavrpdynqkyiaitkvergkydkvmpygpsgikqgdtlyfpavgflprtefqynds
    ncpiihckyskaencrlsmgvnskshyilrsgllkynlsliilqfieiadnrltigspsk
    iynslgqpvfyqasyswdtmiklgdvdtvdplrvqwrnnsvisrpgqsqcprfnvcpevc
    wegtyndaflidrlnwvsagvylnsnqtaenpvfavfkdneilyqvplaeddtnaqktit
    dcfllenviwcislveiydtgdsvirpklfavkipaqcs
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vskD (D:)
    ivlepiywnssnskflpgqglvlypqigdkldiicpkvdsktvgqyeyykvymvdkdqad
    rctikkentpllncakpdqdikftikfqefspnlwglefqknkdyyiistsngslegldn
    qeggvcqtramkilmkvg
    

    Sequence, based on observed residues (ATOM records):
    >2vskD (D:)
    ivlepiywnssnskflpgqglvlypqigdkldiicpkvyeyykvymvdkdqadrctikke
    ntpllncakpdqdikftikfqefspnlwglefqknkdyyiistsngslegldnqeggvcq
    tramkilmkvg