PDB entry 2vs8

View 2vs8 on RCSB PDB site
Description: the crystal structure of i-dmoi in complex with dna and mn
Deposited on 2008-04-21, released 2008-11-11
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.203
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: homing endonuclease I-dmoi
    Species: Desulfurococcus mobilis [TaxId:2274]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VS8 (16-25)
    • Uniprot P21505
  • Chain 'B':
    Compound: 5'-d(*gp*cp*cp*tp*tp*gp*cp*cp*gp*gp *gp*tp*ap*a)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'C':
    Compound: 5'-d(*gp*tp*tp*cp*cp*gp*gp*cp* dgp*dcp*dgp)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'D':
    Compound: 5'-d(*cp*gp*cp*gp*cp*cp*gp*gp*ap*ap *cp*tp*tp*ap*c)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'E':
    Compound: 5'-d(*cp*cp*gp*gp*cp*ap*ap* gp*gp*cp)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'F':
    Compound: homing endonuclease I-dmoi
    Species: Desulfurococcus mobilis [TaxId:2274]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VS8 (16-25)
    • Uniprot P21505 (Start-188)
  • Chain 'G':
    Compound: 5'-d(*gp*cp*cp*tp*tp*gp*cp*cp*gp*gp *gp*tp*ap*a)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'H':
    Compound: 5'-d(*gp*tp*tp*cp*cp*gp*gp*cp* dgp*dcp*dgp)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'I':
    Compound: 5'-d(*cp*gp*cp*gp*cp*cp*gp*gp*ap*ap *cp*tp*tp*ap*c)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'J':
    Compound: 5'-d(*cp*cp*gp*gp*cp*ap*ap* gp*gp*cp)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'K':
    Compound: homing endonuclease I-dmoi
    Species: Desulfurococcus mobilis [TaxId:2274]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VS8 (16-25)
    • Uniprot P21505
  • Chain 'L':
    Compound: 5'-d(*gp*cp*cp*tp*tp*gp*cp*cp*gp*gp *gp*tp*ap*a)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'M':
    Compound: 5'-d(*gp*tp*tp*cp*cp*gp*gp*cp* dgp*dcp*dgp)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'N':
    Compound: 5'-d(*cp*gp*cp*gp*cp*cp*gp*gp*ap*ap *cp*tp*tp*ap*c)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'O':
    Compound: 5'-d(*cp*cp*gp*gp*cp*ap*ap* gp*gp*cp)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Heterogens: MN, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vs8A (A:)
mahnnenvsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqfl
idelnvkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegd
ktlkrlriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtils
shlnplppeaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vs8A (A:)
envsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqflideln
vkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegdktlkr
lriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtilsshlnp
lpp

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2vs8F (F:)
mahnnenvsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqfl
idelnvkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegd
ktlkrlriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtils
shlnplppeaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vs8F (F:)
envsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqflideln
vkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegdktlkr
lriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtilsshlnp
lppeaaalehh

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    Sequence, based on SEQRES records:
    >2vs8K (K:)
mahnnenvsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqfl
idelnvkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegd
ktlkrlriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtils
shlnplppeaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vs8K (K:)
nvsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqflidelnv
kskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegdktlkrl
riwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtilsshl

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.