PDB entry 2vs7

View 2vs7 on RCSB PDB site
Description: the crystal structure of i-dmoi in complex with dna and ca
Deposited on 2008-04-21, released 2008-11-11
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.189
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: homing endonuclease I-dmoi
    Species: Desulfurococcus mobilis [TaxId:2274]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VS7 (Start-24)
    • Uniprot P21505
  • Chain 'B':
    Compound: 5'-d(*gp*cp*cp*tp*tp*gp*cp*cp*gp*gp *gp*tp*ap*ap*gp*tp*tp*cp*cp*gp*gp*cp*gp*cp*g)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'C':
    Compound: 5'-d(*cp*gp*cp*gp*cp*cp*gp*gp*ap*ap *cp*tp*tp*ap*cp*cp*cp*gp*gp*cp*ap*ap*gp*gp*c)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'D':
    Compound: homing endonuclease I-dmoi
    Species: Desulfurococcus mobilis [TaxId:2274]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VS7 (Start-24)
    • Uniprot P21505 (Start-187)
  • Chain 'E':
    Compound: 5'-d(*gp*cp*cp*tp*tp*gp*cp*cp*gp*gp *gp*tp*ap*ap*gp*tp*tp*cp*cp*gp*gp*cp*gp*cp*g)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'F':
    Compound: 5'-d(*cp*gp*cp*gp*cp*cp*gp*gp*ap*ap *cp*tp*tp*ap*cp*cp*cp*gp*gp*cp*ap*ap*gp*gp*c)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'G':
    Compound: homing endonuclease I-dmoi
    Species: Desulfurococcus mobilis [TaxId:2274]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VS7 (Start-24)
    • Uniprot P21505
  • Chain 'H':
    Compound: 5'-d(*gp*cp*cp*tp*tp*gp*cp*cp*gp*gp *gp*tp*ap*ap*gp*tp*tp*cp*cp*gp*gp*cp*gp*cp*g)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Chain 'I':
    Compound: 5'-d(*cp*gp*cp*gp*cp*cp*gp*gp*ap*ap *cp*tp*tp*ap*cp*cp*cp*gp*gp*cp*ap*ap*gp*gp*c)-3'
    Species: DESULFUROCOCCUS MOBILIS, synthetic [TaxId:2274]
  • Heterogens: CA, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vs7A (A:)
ahnnenvsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqfli
delnvkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegdk
tlkrlriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtilss
hlnplppeaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vs7A (A:)
nenvsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqflidel
nvkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegdktlk
rlriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtilsshl

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vs7D (D:)
ahnnenvsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqfli
delnvkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegdk
tlkrlriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtilss
hlnplppeaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vs7D (D:)
envsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqflideln
vkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegdktlkr
lriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtilsshlnp
lppeaaalehh

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2vs7G (G:)
ahnnenvsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqfli
delnvkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegdk
tlkrlriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtilss
hlnplppeaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vs7G (G:)
envsgisayllgliigdgglyklkykgnrseyrvvitqksenlikqhiaplmqflideln
vkskiqivkgdtryelrvsskklyyyfanmlerirlfnmreqiafikglyvaegdktlkr
lriwnknkalleivsrwlnnlgvrntihlddhrhgvyvlnislrdrikfvhtilssh

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.