PDB entry 2vrk

View 2vrk on RCSB PDB site
Description: structure of a seleno-methionyl derivative of wild type arabinofuranosidase from thermobacillus xylanilyticus
Deposited on 2008-04-09, released 2008-07-01
The last revision was dated 2011-05-18, with a file datestamp of 2011-05-13.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.166
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-l-arabinofuranosidase
    Species: THERMOBACILLUS XYLANILYTICUS [TaxId:76633]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: alpha-l-arabinofuranosidase
    Species: THERMOBACILLUS XYLANILYTICUS [TaxId:76633]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: alpha-l-arabinofuranosidase
    Species: THERMOBACILLUS XYLANILYTICUS [TaxId:76633]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vrkA (A:)
mnvasrvvvnadrvkgtinrniyghfsehlgrciyeglwvgedspipntngirndvleal
kqmkipvlrwpggcfadeyhwkdgvgprekrkrmvnthwggviennhfgthefmmlcell
gcepyisgnvgsgtvqemsewveyitfdgespmanwrrengrekpwrikywgvgnenwgc
ggnmraeyyadlyrqfqtylrnygdnklhkiacgantadyhwtevlmkqaapfmhglslh
yytvpgpwekkgpatgfttdewwvtlkkalfmdrlvtkhsaimdvydpdkridlivdewg
twydvepgtnpgflyqqnsirdalvagatlhifhrhcdrvrmaniaqlvnvlqsvilteg
ermlltptyhvfnmfkvhqdaelldtwesvertgpegelpkvsvsasraadgkihislcn
ldfetgasvdielrglnggvsatgttltsgridghntfdepervkpapfrdfklegghln
aslppmsvtvleltag

    Sequence, based on observed residues (ATOM records):
    >2vrkA (A:)
asrvvvnadrvkgtinrniyghfsehlgrciyeglwvgedspipntngirndvlealkqm
kipvlrwpggcfadeyhwkdgvgprekrkrmvnthwggviennhfgthefmmlcellgce
pyisgnvgsgtvqemsewveyitfdgespmanwrrengrekpwrikywgvgnenwgcggn
mraeyyadlyrqfqtylrnygdnklhkiacgantadyhwtevlmkqaapfmhglslhyyt
vpgpwekkgpatgfttdewwvtlkkalfmdrlvtkhsaimdvydpdkridlivdewgtwy
dvepgtnpgflyqqnsirdalvagatlhifhrhcdrvrmaniaqlvnvlqsviltegerm
lltptyhvfnmfkvhqdaelldtwesvertgpegelpkvsvsasraadgkihislcnldf
etgasvdielrglnggvsatgttltsgridghntfdepervkpapfrdfklegghlnasl
ppmsvtvleltag

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vrkB (B:)
mnvasrvvvnadrvkgtinrniyghfsehlgrciyeglwvgedspipntngirndvleal
kqmkipvlrwpggcfadeyhwkdgvgprekrkrmvnthwggviennhfgthefmmlcell
gcepyisgnvgsgtvqemsewveyitfdgespmanwrrengrekpwrikywgvgnenwgc
ggnmraeyyadlyrqfqtylrnygdnklhkiacgantadyhwtevlmkqaapfmhglslh
yytvpgpwekkgpatgfttdewwvtlkkalfmdrlvtkhsaimdvydpdkridlivdewg
twydvepgtnpgflyqqnsirdalvagatlhifhrhcdrvrmaniaqlvnvlqsvilteg
ermlltptyhvfnmfkvhqdaelldtwesvertgpegelpkvsvsasraadgkihislcn
ldfetgasvdielrglnggvsatgttltsgridghntfdepervkpapfrdfklegghln
aslppmsvtvleltag

    Sequence, based on observed residues (ATOM records):
    >2vrkB (B:)
asrvvvnadrvkgtinrniyghfsehlgrciyeglwvgedspipntngirndvlealkqm
kipvlrwpggcfadeyhwkdgvgprekrkrmvnthwggviennhfgthefmmlcellgce
pyisgnvgsgtvqemsewveyitfdgespmanwrrengrekpwrikywgvgnenwgcggn
mraeyyadlyrqfqtylrnygdnklhkiacgantadyhwtevlmkqaapfmhglslhyyt
vpgpwekkgpatgfttdewwvtlkkalfmdrlvtkhsaimdvydpdkridlivdewgtwy
dvepgtnpgflyqqnsirdalvagatlhifhrhcdrvrmaniaqlvnvlqsviltegerm
lltptyhvfnmfkvhqdaelldtwesvertgpegelpkvsvsasraadgkihislcnldf
etgasvdielrglnggvsatgttltsgridghntfdepervkpapfrdfklegghlnasl
ppmsvtvleltag

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vrkC (C:)
mnvasrvvvnadrvkgtinrniyghfsehlgrciyeglwvgedspipntngirndvleal
kqmkipvlrwpggcfadeyhwkdgvgprekrkrmvnthwggviennhfgthefmmlcell
gcepyisgnvgsgtvqemsewveyitfdgespmanwrrengrekpwrikywgvgnenwgc
ggnmraeyyadlyrqfqtylrnygdnklhkiacgantadyhwtevlmkqaapfmhglslh
yytvpgpwekkgpatgfttdewwvtlkkalfmdrlvtkhsaimdvydpdkridlivdewg
twydvepgtnpgflyqqnsirdalvagatlhifhrhcdrvrmaniaqlvnvlqsvilteg
ermlltptyhvfnmfkvhqdaelldtwesvertgpegelpkvsvsasraadgkihislcn
ldfetgasvdielrglnggvsatgttltsgridghntfdepervkpapfrdfklegghln
aslppmsvtvleltag

    Sequence, based on observed residues (ATOM records):
    >2vrkC (C:)
asrvvvnadrvkgtinrniyghfsehlgrciyeglwvgedspipntngirndvlealkqm
kipvlrwpggcfadeyhwkdgvgprekrkrmvnthwggviennhfgthefmmlcellgce
pyisgnvgsgtvqemsewveyitfdgespmanwrrengrekpwrikywgvgnenwgcggn
mraeyyadlyrqfqtylrnygdnklhkiacgantadyhwtevlmkqaapfmhglslhyyt
vpgpwekkgpatgfttdewwvtlkkalfmdrlvtkhsaimdvydpdkridlivdewgtwy
dvepgtnpgflyqqnsirdalvagatlhifhrhcdrvrmaniaqlvnvlqsviltegerm
lltptyhvfnmfkvhqdaelldtwesvertgpegelpkvsvsasraadgkihislcnldf
etgasvdielrglnggvsatgttltsgridghntfdepervkpapfrdfklegghlnasl
ppmsvtvleltag