PDB entry 2vrh

View 2vrh on RCSB PDB site
Description: Structure of the E. coli trigger factor bound to a translating ribosome
Class: ribosome
Keywords: ribosome, trigger factor, ribosomal protein, ribonucleoprotein, co-translational protein folding, rotamase, chaperone, isomerase, cell cycle, RNA-binding, rRNA-binding, cell division, ribosome-nascent chain complex
Deposited on 2008-04-07, released 2008-06-17
The last revision prior to the SCOPe 2.03 freeze date was dated 2013-08-07, with a file datestamp of 2013-08-02.
Experiment type: EM
Resolution: 19 Å
R-factor: N/A
AEROSPACI score: -0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Trigger Factor
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2vrha1, d2vrha2, d2vrha3
  • Chain 'B':
    Compound: 50S ribosomal protein L23
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2vrhb1
  • Chain 'C':
    Compound: 50S ribosomal protein L24
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2vrhc1
  • Chain 'D':
    Compound: 50S ribosomal protein L29
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2vrhd1

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vrhA (A:)
mqvsvettqglgrrvtitiaadsietavkselvnvakkvridgfrkgkvpmnivaqryga
svrqdvlgdlmsrnfidaiikekinpagaptyvpgeyklgedftysvefevypevelqgl
eaievekpivevtdadvdgmldtlrkqqatwkekdgaveaedrvtidftgsvdgeefegg
kasdfvlamgqgrmipgfedgikghkageeftidvtfpeeyhaenlkgkaakfainlkkv
eerelpeltaefikrfgvedgsveglraevrknmerelksairnrvksqaieglvkandi
dvpaalidseidvlrrqaaqrfggnekqalelprelfeeqakrrvvvglllgevirtnel
kadeervkglieemasayedpkeviefysknkelmdnmrnvaleeqaveavlakakvtek
ettfnelmnqqa

    Sequence, based on observed residues (ATOM records): (download) 
    >2vrhA (A:)
mqvsvettqglgrrvtitiaadsietavkselvnvakkvridgfrkgkvpmnivaqryga
svrqdvlgdlmsrnfidaiikekinpagaptyvpgeyklgedftysvefevypevelqgl
eaievekpivevtdadvdgmldtlrkqqatwkekdgaveaedrvtidftgsvdgeefegg
kasdfvlamgqgrmipgfedgikghkageeftidvtfpeeyhaenlkgkaakfainlkkv
eerelpeltaefikrfgvedgsveglraevrknmerelksairnrvksqaieglvkandi
dvpaalidseidvlrrqaaqrfggnekqalelprelfeeqakrrvvvglllgevirtnel
kadeervkglieemasayedpkeviefysknkelmdnmrnvaleeqaveavlakakvtek
ettfnelmnqq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vrhB (B:)
mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvnt
lvvkgkvkrhgqrigrrsdwkkayvtlkegqnldfvggae

    Sequence, based on observed residues (ATOM records): (download) 
    >2vrhB (B:)
mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvnt
lvvkgkvkrhgqrigrrsdwkkayvtlkegqnldfvgga

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2vrhC (C:)
aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnsetik

    Sequence, based on observed residues (ATOM records): (download) 
    >2vrhC (C:)
aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnseti

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2vrhD (D:)
mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnek
aga