PDB entry 2vrh

View 2vrh on RCSB PDB site
Description: structure of the e. coli trigger factor bound to a translating ribosome
Class: ribosome
Keywords: ribosome, trigger factor, ribosomal protein, ribonucleoprotein, co-translational protein folding, rotamase, chaperone, isomerase, cell cycle, RNA-binding, rRNA-binding, cell division, ribosome-nascent chain complex
Deposited on 2008-04-07, released 2008-06-17
The last revision prior to the SCOP 1.75 freeze date was dated 2008-06-17, with a file datestamp of 2008-06-13.
Experiment type: EM
Resolution: 19 Å
R-factor: N/A
AEROSPACI score: -0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Trigger Factor
    Species: ESCHERICHIA COLI
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2vrha1, d2vrha2, d2vrha3
  • Chain 'B':
    Compound: 50S ribosomal protein L23
    Species: ESCHERICHIA COLI
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2vrhb1
  • Chain 'C':
    Compound: 50S ribosomal protein L24
    Species: ESCHERICHIA COLI
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2vrhc1
  • Chain 'D':
    Compound: 50S ribosomal protein L29
    Species: ESCHERICHIA COLI
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2vrhd1

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2vrhA (A:)
    mqvsvettqglgrrvtitiaadsietavkselvnvakkvridgfrkgkvpmnivaqryga
    svrqdvlgdlmsrnfidaiikekinpagaptyvpgeyklgedftysvefevypevelqgl
    eaievekpivevtdadvdgmldtlrkqqatwkekdgaveaedrvtidftgsvdgeefegg
    kasdfvlamgqgrmipgfedgikghkageeftidvtfpeeyhaenlkgkaakfainlkkv
    eerelpeltaefikrfgvedgsveglraevrknmerelksairnrvksqaieglvkandi
    dvpaalidseidvlrrqaaqrfggnekqalelprelfeeqakrrvvvglllgevirtnel
    kadeervkglieemasayedpkeviefysknkelmdnmrnvaleeqaveavlakakvtek
    ettfnelmnqqa
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vrhA (A:)
    mqvsvettqglgrrvtitiaadsietavkselvnvakkvridgfrkgkvpmnivaqryga
    svrqdvlgdlmsrnfidaiikekinpagaptyvpgeyklgedftysvefevypevelqgl
    eaievekpivevtdadvdgmldtlrkqqatwkekdgaveaedrvtidftgsvdgeefegg
    kasdfvlamgqgrmipgfedgikghkageeftidvtfpeeyhaenlkgkaakfainlkkv
    eerelpeltaefikrfgvedgsveglraevrknmerelksairnrvksqaieglvkandi
    dvpaalidseidvlrrqaaqrfggnekqalelprelfeeqakrrvvvglllgevirtnel
    kadeervkglieemasayedpkeviefysknkelmdnmrnvaleeqaveavlakakvtek
    ettfnelmnqq
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2vrhB (B:)
    mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvnt
    lvvkgkvkrhgqrigrrsdwkkayvtlkegqnldfvggae
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vrhB (B:)
    mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvnt
    lvvkgkvkrhgqrigrrsdwkkayvtlkegqnldfvgga
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2vrhC (C:)
    aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
    eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnsetik
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vrhC (C:)
    aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
    eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnseti
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2vrhD (D:)
    mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnek
    aga