PDB entry 2vqz
View 2vqz on RCSB PDB site
Description: structure of the cap-binding domain of influenza virus polymerase subunit pb2 with bound m7gtp
Class: transcription
Keywords: RNA-dependent RNA polymerase, transcription, pb2 subunit, influenza virus, cap-binding domain
Deposited on
2008-03-21, released
2008-05-13
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-05-19, with a file datestamp of
2009-05-15.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.189
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Polymerase basic protein 2
Species: INFLUENZA A VIRUS [TaxId:11320]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2vqza_ - Chain 'B':
Compound: Polymerase basic protein 2
Species: INFLUENZA A VIRUS [TaxId:11320]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2vqzb_ - Chain 'D':
Compound: Polymerase basic protein 2
Species: INFLUENZA A VIRUS [TaxId:11320]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2vqzd_ - Chain 'E':
Compound: Polymerase basic protein 2
Species: INFLUENZA A VIRUS [TaxId:11320]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Polymerase basic protein 2
Species: INFLUENZA A VIRUS [TaxId:11320]
Database cross-references and differences (RAF-indexed):
- Heterogens: MGT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2vqzA (A:)
risssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrka
trrlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrh
fqkdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
Sequence, based on observed residues (ATOM records): (download)
>2vqzA (A:)
sssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrkatr
rlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrhfq
kdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2vqzB (B:)
risssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrka
trrlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrh
fqkdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
Sequence, based on observed residues (ATOM records): (download)
>2vqzB (B:)
sssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrkatr
rlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvanqrlnpmhqllrhfqkd
akvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2vqzD (D:)
risssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrka
trrlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrh
fqkdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
Sequence, based on observed residues (ATOM records): (download)
>2vqzD (D:)
isssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrkat
rrlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrhf
qkdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.