PDB entry 2vqz

View 2vqz on RCSB PDB site
Description: structure of the cap-binding domain of influenza virus polymerase subunit pb2 with bound m7gtp
Class: transcription
Keywords: RNA-dependent RNA polymerase, transcription, pb2 subunit, influenza virus, cap-binding domain
Deposited on 2008-03-21, released 2008-05-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-05-19, with a file datestamp of 2009-05-15.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.189
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase basic protein 2
    Species: INFLUENZA A VIRUS [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31345 (Start-165)
      • engineered mutation (71)
    Domains in SCOPe 2.08: d2vqza_
  • Chain 'B':
    Compound: Polymerase basic protein 2
    Species: INFLUENZA A VIRUS [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31345 (Start-165)
      • engineered mutation (71)
    Domains in SCOPe 2.08: d2vqzb_
  • Chain 'D':
    Compound: Polymerase basic protein 2
    Species: INFLUENZA A VIRUS [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31345 (Start-165)
      • engineered mutation (71)
    Domains in SCOPe 2.08: d2vqzd_
  • Chain 'E':
    Compound: Polymerase basic protein 2
    Species: INFLUENZA A VIRUS [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31345 (Start-165)
      • engineered mutation (71)
  • Chain 'F':
    Compound: Polymerase basic protein 2
    Species: INFLUENZA A VIRUS [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31345 (Start-165)
      • engineered mutation (71)
  • Heterogens: MGT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2vqzA (A:)
    risssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrka
    trrlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrh
    fqkdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vqzA (A:)
    sssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrkatr
    rlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrhfq
    kdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2vqzB (B:)
    risssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrka
    trrlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrh
    fqkdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vqzB (B:)
    sssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrkatr
    rlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvanqrlnpmhqllrhfqkd
    akvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2vqzD (D:)
    risssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrka
    trrlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrh
    fqkdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vqzD (D:)
    isssfsfggftfkrtsgssikreeevltgnlqtlkirvhegyeeftmvgkratailrkat
    rrlvqlivsgkdeqsiaeaiivamvfsqedcmikavrgdlnfvnranqrlnpmhqllrhf
    qkdakvlfqnwgiehidnvmgmvgvlpdmtpstemsmrgirvskm
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.