PDB entry 2vq1

View 2vq1 on RCSB PDB site
Description: anti trimeric lewis x fab54-5c10-a
Class: immune system
Keywords: monoclonal antibody, receptor, diagnosis, schistosomiasis, carbohydrate recognition, immune system
Deposited on 2008-03-10, released 2009-01-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-06-29, with a file datestamp of 2011-06-24.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.206
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: igkv1-117 protein
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VQ1 (0-216)
    Domains in SCOPe 2.08: d2vq1a1, d2vq1a2
  • Chain 'B':
    Compound: anti-human fc gamma receptor III 3g8 gamma heavy chain variable region
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VQ1 (0-217)
    Domains in SCOPe 2.08: d2vq1b_
  • Chain 'E':
    Compound: igkv1-117 protein
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VQ1 (0-216)
    Domains in SCOPe 2.08: d2vq1e1, d2vq1e2
  • Chain 'F':
    Compound: anti-human fc gamma receptor III 3g8 gamma heavy chain variable region
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VQ1 (0-217)
    Domains in SCOPe 2.08: d2vq1f_
  • Heterogens: GLY, GOL, AZI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2vq1A (A:)
dvvmtqtplslsvslgdqasiscrssqslvhsngntflqwylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkisrmeaedlgiyfcsqtthvpwtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vq1B (B:)
qitleesgpgilqpsqtlsltcsfsgfslsssamsvgwirqpsgkglewlahiwwnddky
ynpalksrltvskdssdnqvflkiasvvtadtatyycaripgfgfdywgqgttltvssat
ttapsvyplvpgcsdtsgssvtlgclvkgyfpepvtvkwnygalssgvrtvssvlqsgfy
slsslvtvpsstwpsqtvicnvahpasktelikriepr

    Sequence, based on observed residues (ATOM records): (download) 
    >2vq1B (B:)
qitleesgpgilqpsqtlsltcsfsgfslsssamsvgwirqpsgkglewlahiwwnddky
ynpalksrltvskdssdnqvflkiasvvtadtatyycaripgfgfdywgqgttltvssat
ttapsvyplvpgcssvtlgclvkgyfpepvtvkwnygalssgvrtvssvlqsgfyslssl
vtvpsstwpsqtvicnvahpasktelikriepr

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2vq1E (E:)
dvvmtqtplslsvslgdqasiscrssqslvhsngntflqwylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkisrmeaedlgiyfcsqtthvpwtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrn

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2vq1F (F:)
qitleesgpgilqpsqtlsltcsfsgfslsssamsvgwirqpsgkglewlahiwwnddky
ynpalksrltvskdssdnqvflkiasvvtadtatyycaripgfgfdywgqgttltvssat
ttapsvyplvpgcsdtsgssvtlgclvkgyfpepvtvkwnygalssgvrtvssvlqsgfy
slsslvtvpsstwpsqtvicnvahpasktelikriepr

    Sequence, based on observed residues (ATOM records): (download) 
    >2vq1F (F:)
qitleesgpgilqpsqtlsltcsfsgfslsssamsvgwirqpsgkglewlahiwwnddky
ynpalksrltvskdssdnqvflkiasvvtadtatyycaripgfgfdywgqgttltvssat
ttapsvyplvpssvtlgclvkgyfpepvtvkwnygalssgvrtvssvlqsgfyslsslvt
vpsstwpsqtvicnvahpasktelikriepr