PDB entry 2vpy

View 2vpy on RCSB PDB site
Description: polysulfide reductase with bound quinone inhibitor, pentachlorophenol (pcp)
Deposited on 2008-03-09, released 2008-06-10
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.283
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: thiosulfate reductase
    Species: Thermus thermophilus [TaxId:262724]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: nrfc protein
    Species: Thermus thermophilus [TaxId:262724]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: hypothetical Membrane Spanning Protein
    Species: Thermus thermophilus [TaxId:262724]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: thiosulfate reductase
    Species: Thermus thermophilus [TaxId:262724]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: nrfc protein
    Species: Thermus thermophilus [TaxId:262724]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: hypothetical Membrane Spanning Protein
    Species: Thermus thermophilus [TaxId:262724]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SF4, MGD, MO, PCI, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vpyA (A:)
    mqrreflklsalgvgamalrgsgpakalkapwyaqevksvyqicegcfwrcgivahavgn
    rvykvegyeanpksrgrlcprgqgapqttydpdrlkrplirvegsqrgegkyrvatweea
    ldhiakkmleirekygpeaiaffghgtgdywfvdflpaawgspnaakpsvslctapreva
    sqwvfgrpigghepidwenaryivlighhigedthntqlqdfalalkngakvvvvdprfs
    taaakahrwlpikpgtdtalllawihvliyedlydkeyvakytvgfeelkahvkdftpew
    aekhteipaqvirevaremaahkpravlpptrhnvwygddtyrvmallyvnvllgnygrp
    ggfyiaqspylekyplpplplepaaggcsgpsggdhepegfkpradkgkffarstaiqel
    iepmitgepypikglfayginlfhsipnvprtkealknldlyvaidvlpqehvmwadvil
    peatyleryddfvlvahktpfiqlrtpaheplfdtkpgwwiarelglrlgleqyfpwkti
    eeyletrlqslgldletmkgmgtlvqrgkpwledwekegrlpfgtasgkielycqrfkea
    ghqplpvftppeeppegfyrllygrspvhtfartqnnwvlmemdpenevwihkeeakrlg
    lkegdyvmlvnqdgvkegpvrvkptarirkdcvyivhgfghkaplmrlahgrgasdnylq
    trykldpisggaglrvnfvrlekaerprlpsltglakrpfderrm
    

    Sequence, based on observed residues (ATOM records):
    >2vpyA (A:)
    apwyaqevksvyqicegcfwrcgivahavgnrvykvegyeanpksrgrlcprgqgapqtt
    ydpdrlkrplirvegsqrgegkyrvatweealdhiakkmleirekygpeaiaffghgtgd
    ywfvdflpaawgspnaakpsvslctaprevasqwvfgrpigghepidwenaryivlighh
    igedthntqlqdfalalkngakvvvvdprfstaaakahrwlpikpgtdtalllawihvli
    yedlydkeyvakytvgfeelkahvkdftpewaekhteipaqvirevaremaahkpravlp
    ptrhnvwygddtyrvmallyvnvllgnygrpggfyiaqspylekyplpplplepaaggcs
    gpsggdhepegfkpradkgkffarstaiqeliepmitgepypikglfayginlfhsipnv
    prtkealknldlyvaidvlpqehvmwadvilpeatyleryddfvlvahktpfiqlrtpah
    eplfdtkpgwwiarelglrlgleqyfpwktieeyletrlqslgldletmkgmgtlvqrgk
    pwledwekegrlpfgtasgkielycqrfkeaghqplpvftppeeppegfyrllygrspvh
    tfartqnnwvlmemdpenevwihkeeakrlglkegdyvmlvnqdgvkegpvrvkptarir
    kdcvyivhgfghkaplmrlahgrgasdnylqtrykldpisggaglrvnfvrlekaerprl
    psltglakrpfderr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vpyB (B:)
    mpryamaidlslcvgcaacavackmenevppgvfnlwirerevgeypnlvvefrpeqclh
    cenppcvpvcptgasyqtkdglvlvdpkkciacgaciaacpydarylhpagyvskctfca
    hrlekgkvpacvetcptycrtfgdledpespvakalkaaervdvlrpeqgtrpklfylna
    pskkgltresevhhg
    

    Sequence, based on observed residues (ATOM records):
    >2vpyB (B:)
    mpryamaidlslcvgcaacavackmenevppgvfnlwirerevgeypnlvvefrpeqclh
    cenppcvpvcptgasyqtkdglvlvdpkkciacgaciaacpydarylhpagyvskctfca
    hrlekgkvpacvetcptycrtfgdledpespvakalkaaervdvlrpeqgtrpklfylna
    pskkgltresevhh
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vpyC (C:)
    maefyglpnaqefwhwtnalhfvlvglaggvallaallhlkgdaearrytlyalmliald
    lfilwaesparfrfthiwlflsfhptspiwwgawglglgfltggllylgkgsqralawal
    lvfslvalsypglalavnlnrplwnglmaglfpltalvlalglaallkspwalfplrvla
    gaslllallypltlppearghlleeagfwyglflllglgtfwqerlapwagllaaaglra
    llvlagqwqglgl
    

    Sequence, based on observed residues (ATOM records):
    >2vpyC (C:)
    aefyglpnaqefwhwtnalhfvlvglaggvallaallhlkgdaearrytlyalmlialdl
    filwaesparfrfthiwlflsfhptspiwwgawglglgfltggllylgkgsqralawall
    vfslvalsypglalavnlnrplwnglmaglfpltalvlalglaallkspwalfplrvlag
    aslllallypltlppearghlleeagfwyglflllglgtfwqerlapwagllaaaglral
    lvlagqwqglg
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2vpyE (E:)
    mqrreflklsalgvgamalrgsgpakalkapwyaqevksvyqicegcfwrcgivahavgn
    rvykvegyeanpksrgrlcprgqgapqttydpdrlkrplirvegsqrgegkyrvatweea
    ldhiakkmleirekygpeaiaffghgtgdywfvdflpaawgspnaakpsvslctapreva
    sqwvfgrpigghepidwenaryivlighhigedthntqlqdfalalkngakvvvvdprfs
    taaakahrwlpikpgtdtalllawihvliyedlydkeyvakytvgfeelkahvkdftpew
    aekhteipaqvirevaremaahkpravlpptrhnvwygddtyrvmallyvnvllgnygrp
    ggfyiaqspylekyplpplplepaaggcsgpsggdhepegfkpradkgkffarstaiqel
    iepmitgepypikglfayginlfhsipnvprtkealknldlyvaidvlpqehvmwadvil
    peatyleryddfvlvahktpfiqlrtpaheplfdtkpgwwiarelglrlgleqyfpwkti
    eeyletrlqslgldletmkgmgtlvqrgkpwledwekegrlpfgtasgkielycqrfkea
    ghqplpvftppeeppegfyrllygrspvhtfartqnnwvlmemdpenevwihkeeakrlg
    lkegdyvmlvnqdgvkegpvrvkptarirkdcvyivhgfghkaplmrlahgrgasdnylq
    trykldpisggaglrvnfvrlekaerprlpsltglakrpfderrm
    

    Sequence, based on observed residues (ATOM records):
    >2vpyE (E:)
    apwyaqevksvyqicegcfwrcgivahavgnrvykvegyeanpksrgrlcprgqgapqtt
    ydpdrlkrplirvegsqrgegkyrvatweealdhiakkmleirekygpeaiaffghgtgd
    ywfvdflpaawgspnaakpsvslctaprevasqwvfgrpigghepidwenaryivlighh
    igedthntqlqdfalalkngakvvvvdprfstaaakahrwlpikpgtdtalllawihvli
    yedlydkeyvakytvgfeelkahvkdftpewaekhteipaqvirevaremaahkpravlp
    ptrhnvwygddtyrvmallyvnvllgnygrpggfyiaqspylekyplpplplepaaggcs
    gpsggdhepegfkpradkgkffarstaiqeliepmitgepypikglfayginlfhsipnv
    prtkealknldlyvaidvlpqehvmwadvilpeatyleryddfvlvahktpfiqlrtpah
    eplfdtkpgwwiarelglrlgleqyfpwktieeyletrlqslgldletmkgmgtlvqrgk
    pwledwekegrlpfgtasgkielycqrfkeaghqplpvftppeeppegfyrllygrspvh
    tfartqnnwvlmemdpenevwihkeeakrlglkegdyvmlvnqdgvkegpvrvkptarir
    kdcvyivhgfghkaplmrlahgrgasdnylqtrykldpisggaglrvnfvrlekaerprl
    psltglakrpfderr
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2vpyF (F:)
    mpryamaidlslcvgcaacavackmenevppgvfnlwirerevgeypnlvvefrpeqclh
    cenppcvpvcptgasyqtkdglvlvdpkkciacgaciaacpydarylhpagyvskctfca
    hrlekgkvpacvetcptycrtfgdledpespvakalkaaervdvlrpeqgtrpklfylna
    pskkgltresevhhg
    

    Sequence, based on observed residues (ATOM records):
    >2vpyF (F:)
    mpryamaidlslcvgcaacavackmenevppgvfnlwirerevgeypnlvvefrpeqclh
    cenppcvpvcptgasyqtkdglvlvdpkkciacgaciaacpydarylhpagyvskctfca
    hrlekgkvpacvetcptycrtfgdledpespvakalkaaervdvlrpeqgtrpklfylna
    pskkgltresevhh
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2vpyG (G:)
    maefyglpnaqefwhwtnalhfvlvglaggvallaallhlkgdaearrytlyalmliald
    lfilwaesparfrfthiwlflsfhptspiwwgawglglgfltggllylgkgsqralawal
    lvfslvalsypglalavnlnrplwnglmaglfpltalvlalglaallkspwalfplrvla
    gaslllallypltlppearghlleeagfwyglflllglgtfwqerlapwagllaaaglra
    llvlagqwqglgl
    

    Sequence, based on observed residues (ATOM records):
    >2vpyG (G:)
    aefyglpnaqefwhwtnalhfvlvglaggvallaallhlkgdaearrytlyalmlialdl
    filwaesparfrfthiwlflsfhptspiwwgawglglgfltggllylgkgsqralawall
    vfslvalsypglalavnlnrplwnglmaglfpltalvlalglaallkspwalfplrvlag
    aslllallypltlppearghlleeagfwyglflllglgtfwqerlapwagllaaaglral
    lvlagqwqglg