PDB entry 2vpg

View 2vpg on RCSB PDB site
Description: decoding of methylated histone h3 tail by the pygo-bcl9 wnt signaling complex
Deposited on 2008-02-27, released 2008-06-17
The last revision was dated 2019-05-29, with a file datestamp of 2019-05-24.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pygopus homolog 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VPG (Start-3)
    • Uniprot Q9Y3Y4 (4-62)
  • Chain 'B':
    Compound: b-cell cll/lymphoma 9 protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VPG (0-2)
    • Uniprot O00512 (3-End)
  • Chain 'C':
    Compound: Pygopus homolog 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VPG (0-3)
    • Uniprot Q9Y3Y4 (4-62)
  • Chain 'D':
    Compound: b-cell cll/lymphoma 9 protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VPG (0-2)
    • Uniprot O00512 (3-End)
  • Chain 'P':
    Compound: Histone H3 tail
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VPG (0-End)
  • Chain 'R':
    Compound: Histone H3 tail
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VPG (0-End)
  • Heterogens: GOL, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vpgA (A:)
gamavypcgictnevnddqdailceascqkwfhrictgmtetayglltaeasavwgcdtc
mad

    Sequence, based on observed residues (ATOM records):
    >2vpgA (A:)
mavypcgictnevnddqdailceascqkwfhrictgmtetayglltaeasavwgcdtcma
d

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vpgB (B:)
gamvyvfstemankaaeavlkgqvetivsfhi

    Sequence, based on observed residues (ATOM records):
    >2vpgB (B:)
gamvyvfstemankaaeavlkgqvetivsf

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >2vpgC (C:)
gamavypcgictnevnddqdailceascqkwfhrictgmtetayglltaeasavwgcdtc
mad

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vpgD (D:)
gamvyvfstemankaaeavlkgqvetivsfhi

    Sequence, based on observed residues (ATOM records):
    >2vpgD (D:)
gamvyvfstemankaaeavlkgqvetivsf

  • Chain 'P':
    Sequence, based on SEQRES records:
    >2vpgP (P:)
axtkqtarkstggkaprk

    Sequence, based on observed residues (ATOM records):
    >2vpgP (P:)
axtkqta

  • Chain 'R':
    Sequence, based on SEQRES records:
    >2vpgR (R:)
axtkqtarkstggkaprk

    Sequence, based on observed residues (ATOM records):
    >2vpgR (R:)
axtkqta