PDB entry 2vof

View 2vof on RCSB PDB site
Description: structure of mouse a1 bound to the puma bh3-domain
Class: apoptosis
Keywords: bh3, bcl-2, apoptosis, pro-survival, mitochondrion, protein-protein complex
Deposited on 2008-02-17, released 2008-03-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.184
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: bcl-2-related protein a1
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VOF (Start-4)
      • engineered mutation (108)
      • engineered mutation (117)
    • Uniprot Q07440 (5-End)
    Domains in SCOPe 2.08: d2vofa1, d2vofa2
  • Chain 'B':
    Compound: Bcl-2-binding component 3
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99ML1
      • engineered mutation (14)
  • Chain 'C':
    Compound: bcl-2-related protein a1
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VOF (Start-4)
      • engineered mutation (108)
      • engineered mutation (117)
    • Uniprot Q07440 (5-End)
    Domains in SCOPe 2.08: d2vofc1, d2vofc2
  • Chain 'D':
    Compound: Bcl-2-binding component 3
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99ML1
      • engineered mutation (14)
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2vofA (A:)
    gplgsmaeselmhihslaehylqyvlqvpafesapsqacrvlqrvafsvqkeveknlksy
    lddfhvesidtariifnqvmekefedgiinwgrivtifafggvllkklkqeqialdvsay
    kqvssfvaefimnntgewirqnggwedgfikkfepks
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vofA (A:)
    gsmaeselmhihslaehylqyvlqvpafeapsqacrvlqrvafsvqkeveknlksylddf
    hvesidtariifnqvmekefedgiinwgrivtifafggvllkklkqesaykqvssfvaef
    imnntgewirqnggwedgfikkfep
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2vofC (C:)
    gplgsmaeselmhihslaehylqyvlqvpafesapsqacrvlqrvafsvqkeveknlksy
    lddfhvesidtariifnqvmekefedgiinwgrivtifafggvllkklkqeqialdvsay
    kqvssfvaefimnntgewirqnggwedgfikkfepks
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vofC (C:)
    lgsmaeselmhihslaehylqyvlqvpafepsqacrvlqrvafsvqkeveknlksylddf
    hvesidtariifnqvmekefedgiinwgrivtifafggvllkklkqeqialdvsaykqvs
    sfvaefimnntgewirqnggwedgfikkfe
    

  • Chain 'D':
    No sequence available.