PDB entry 2vo9

View 2vo9 on RCSB PDB site
Description: crystal structure of the enzymatically active domain of the listeria monocytogenes bacteriophage 500 endolysin ply500
Class: hydrolase
Keywords: cell wall biogenesis/degradation, secreted, cell wall, hydrolase
Deposited on 2008-02-09, released 2008-02-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-02-27, with a file datestamp of 2019-02-22.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-alanyl-d-glutamate peptidase
    Species: BACTERIOPHAGE A500 [TaxId:40522]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VO9 (Start-11)
    • Uniprot Q37979 (12-End)
    Domains in SCOPe 2.08: d2vo9a1, d2vo9a2
  • Chain 'B':
    Compound: l-alanyl-d-glutamate peptidase
    Species: BACTERIOPHAGE A500 [TaxId:40522]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VO9 (Start-11)
    • Uniprot Q37979 (12-End)
    Domains in SCOPe 2.08: d2vo9b2, d2vo9b3
  • Chain 'C':
    Compound: l-alanyl-d-glutamate peptidase
    Species: BACTERIOPHAGE A500 [TaxId:40522]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VO9 (Start-11)
    • Uniprot Q37979 (12-End)
    Domains in SCOPe 2.08: d2vo9c2, d2vo9c3
  • Heterogens: ZN, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vo9A (A:)
aswshpqfekgamalteawliekanrklnaggmykitsdktrnvikkmakegiylcvaqg
yrstaeqnalyaqgrtkpgaivtnakggqsnhnygvavdlclytndgkdviwesttsrwk
kvvaamkaegfkwggdwksfkdyphfelcdavsgekipaatqntntnsnryegkvidsa

    Sequence, based on observed residues (ATOM records): (download) 
    >2vo9A (A:)
amalteawliekanrklnaggmykitsdktrnvikkmakegiylcvaqgyrstaeqnaly
aqgrtkpgaivtnakggqsnhnygvavdlclytndgkdviwesttsrwkkvvaamkaegf
kwggdwksfkdyphfelcdavsgekipaa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vo9B (B:)
aswshpqfekgamalteawliekanrklnaggmykitsdktrnvikkmakegiylcvaqg
yrstaeqnalyaqgrtkpgaivtnakggqsnhnygvavdlclytndgkdviwesttsrwk
kvvaamkaegfkwggdwksfkdyphfelcdavsgekipaatqntntnsnryegkvidsa

    Sequence, based on observed residues (ATOM records): (download) 
    >2vo9B (B:)
amalteawliekanrklnaggmykitsdktrnvikkmakegiylcvaqgyrstaeqnaly
aqgrtkpgaivtnakggqsnhnygvavdlclytndgkdviwesttsrwkkvvaamkaegf
kwggdwksfkdyphfelcdavsgekipaa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2vo9C (C:)
aswshpqfekgamalteawliekanrklnaggmykitsdktrnvikkmakegiylcvaqg
yrstaeqnalyaqgrtkpgaivtnakggqsnhnygvavdlclytndgkdviwesttsrwk
kvvaamkaegfkwggdwksfkdyphfelcdavsgekipaatqntntnsnryegkvidsa

    Sequence, based on observed residues (ATOM records): (download) 
    >2vo9C (C:)
amalteawliekanrklnaggmykitsdktrnvikkmakegiylcvaqgyrstaeqnaly
aqgrtkpgaivtnakggqsnhnygvavdlclytndgkdviwesttsrwkkvvaamkaegf
kwggdwksfkdyphfelcdavsgekipaa