PDB entry 2vn5

View 2vn5 on RCSB PDB site
Description: the clostridium cellulolyticum dockerin displays a dual binding mode for its cohesin partner
Class: cell adhesion
Keywords: carbohydrate metabolism, polysaccharide degradation, cohesin, dockerin, hydrolase, cellulosome, glycosidase, cellulose degradation, cell adhesion
Deposited on 2008-01-31, released 2008-05-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.182
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: scaffolding protein
    Species: Clostridium cellulolyticum [TaxId:1521]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vn5a_
  • Chain 'B':
    Compound: endoglucanase A
    Species: Clostridium cellulolyticum [TaxId:1521]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17901
      • conflict (45-46)
    Domains in SCOPe 2.08: d2vn5b_
  • Chain 'C':
    Compound: scaffolding protein
    Species: Clostridium cellulolyticum [TaxId:1521]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vn5c_
  • Chain 'D':
    Compound: endoglucanase A
    Species: Clostridium cellulolyticum [TaxId:1521]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17901
      • conflict (45-46)
    Domains in SCOPe 2.08: d2vn5d_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vn5A (A:)
tvlpkdipgdslkvtvgtangkpgdtvtvpvtfadvakmknvgtcnfylgydasllevvs
vdagpivknaavnfsssasngtisflfldntitdelitadgvfanikfklksvtaktttp
vtfkdggafgdgtmskiasvtktngsvtidp

    Sequence, based on observed residues (ATOM records): (download) 
    >2vn5A (A:)
dslkvtvgtangkpgdtvtvpvtfadvakmknvgtcnfylgydasllevvsvdagpivkn
aavnfsssasngtisflfldntitdelitadgvfanikfklksvtaktttpvtfkdggaf
gdgtmskiasvtktngsvtidp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vn5B (B:)
vivygdynndgnvdaldfaglkkyimaadhayvknldvnldnevnstdlailkkyllgmv
sklpsn

    Sequence, based on observed residues (ATOM records): (download) 
    >2vn5B (B:)
ivygdynndgnvdaldfaglkkyimaayvknldvnldnevnstdlailkkyllgmv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2vn5C (C:)
tvlpkdipgdslkvtvgtangkpgdtvtvpvtfadvakmknvgtcnfylgydasllevvs
vdagpivknaavnfsssasngtisflfldntitdelitadgvfanikfklksvtaktttp
vtfkdggafgdgtmskiasvtktngsvtidp

    Sequence, based on observed residues (ATOM records): (download) 
    >2vn5C (C:)
tvlpkddslkvtvgtangkpgdtvtvpvtfadvakmknvgtcnfylgydasllevvsvda
gpivknaavnfsssasngtisflfldntitdelitadgvfanikfklksvtaktttpvtf
kdggafgdgtmskiasvtktngsvtidp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2vn5D (D:)
vivygdynndgnvdaldfaglkkyimaadhayvknldvnldnevnstdlailkkyllgmv
sklpsn

    Sequence, based on observed residues (ATOM records): (download) 
    >2vn5D (D:)
ivygdynndgnvdaldfaglkkyimaayvknldvnldnevnstdlailkkyllgm