PDB entry 2vmk

View 2vmk on RCSB PDB site
Description: crystal structure of e. coli rnase e apoprotein - catalytic domain
Deposited on 2008-01-28, released 2008-07-22
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.268
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease E
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Ribonuclease E
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Ribonuclease E
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Ribonuclease E
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vmkA (A:)
    mkrmlinatqqeelrvalvdgqrlydldiespgheqkkaniykgkitriepsleaafvdy
    gaerhgflplkeiareyfpanysahgrpnikdvlregqevivqidkeergnkgaalttfi
    slagsylvlmpnnpraggisrriegddrtelkealaslelpegmglivrtagvgksaeal
    qwdlsfrlkhweaikkaaesrpapflihqesnvivrafrdylrqdigeilidnpkvlela
    rqhiaalgrpdfsskiklytgeiplfshyqiesqiesafqrevrlpsggsividstealt
    aidinsaratrggdieetafntnleaadeiarqlrlrdlgglividfidmtpvrhqrave
    nrlreavrqdrariqishisrfgllemsrqrlspslgesshhvcprcsgtgtvrdnesls
    lsilrlieeealkentqevhaivpvpiasyllnekrsavnaietrqdgvrcvivpndqme
    tphyhvlrvrkgeetptlsymlpklheeamalpse
    

    Sequence, based on observed residues (ATOM records):
    >2vmkA (A:)
    mkrmlinatqqeelrvalvdgqrlydldieseqkkaniykgkitriepsleaafvdygae
    rhgflplkeiareyfprpnikdvlregqevivqidkeergnkgaalttfislagsylvlm
    pnnpraggisrrirtelkealaslelpegmglivrtagvgksaealqwdlsfrlkhweai
    kkaaesrpapflihqesnvivrafrdylrqdigeilidnpkvlelarqhiaalgrpdfss
    kiklytgeiplfshyqiesqiesafqrevrlpsggsividstealtaidinsardieeta
    fntnleaadeiarqlrlrdlgglividfidmtpvrhqravenrlreavrqdrariqishi
    srfgllemsrqrlspslgesshhvcprcsgtgtvrdneslslsilrlieeealkentqev
    haivpvpiasyllnekrsavnaietrqdgvrcvivpndqmetphyhvlrvrkgeetptls
    ymlpklhee
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vmkB (B:)
    mkrmlinatqqeelrvalvdgqrlydldiespgheqkkaniykgkitriepsleaafvdy
    gaerhgflplkeiareyfpanysahgrpnikdvlregqevivqidkeergnkgaalttfi
    slagsylvlmpnnpraggisrriegddrtelkealaslelpegmglivrtagvgksaeal
    qwdlsfrlkhweaikkaaesrpapflihqesnvivrafrdylrqdigeilidnpkvlela
    rqhiaalgrpdfsskiklytgeiplfshyqiesqiesafqrevrlpsggsividstealt
    aidinsaratrggdieetafntnleaadeiarqlrlrdlgglividfidmtpvrhqrave
    nrlreavrqdrariqishisrfgllemsrqrlspslgesshhvcprcsgtgtvrdnesls
    lsilrlieeealkentqevhaivpvpiasyllnekrsavnaietrqdgvrcvivpndqme
    tphyhvlrvrkgeetptlsymlpklheeamalpse
    

    Sequence, based on observed residues (ATOM records):
    >2vmkB (B:)
    mkrmlinatlrvalvdgqrlydldiheqkkaniykgkitriepsleaafvdygaerhgfl
    plkeiareyfparpnikdvlregqevivqidkeergnkgaalttfislagsylvlmpnnp
    raggisrriegddrtelkealaslelpegmglivrtagvgksaealqwdlsfrlkhweai
    kkaaesrpapflihqesnvivrafrdylrqdigeilidnpkvlelarqhiaalgrpdfss
    kiklytgeiplfshyqiesqiesafqrevrlpsggsividstealtaidinsargdieet
    afntnleaadeiarqlrlrdlgglividfidmtpvrhqravenrlreavrqdrariqish
    isrfgllemsrqrlspslgesshhvcprcsgtgtvrdneslslsilrlieeealkentqe
    vhaivpvpiasyllnekrsavnaietrqdgvrcvivpndqmetphyhvlrvrkgeetptl
    symlpklheeamalp
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vmkC (C:)
    mkrmlinatqqeelrvalvdgqrlydldiespgheqkkaniykgkitriepsleaafvdy
    gaerhgflplkeiareyfpanysahgrpnikdvlregqevivqidkeergnkgaalttfi
    slagsylvlmpnnpraggisrriegddrtelkealaslelpegmglivrtagvgksaeal
    qwdlsfrlkhweaikkaaesrpapflihqesnvivrafrdylrqdigeilidnpkvlela
    rqhiaalgrpdfsskiklytgeiplfshyqiesqiesafqrevrlpsggsividstealt
    aidinsaratrggdieetafntnleaadeiarqlrlrdlgglividfidmtpvrhqrave
    nrlreavrqdrariqishisrfgllemsrqrlspslgesshhvcprcsgtgtvrdnesls
    lsilrlieeealkentqevhaivpvpiasyllnekrsavnaietrqdgvrcvivpndqme
    tphyhvlrvrkgeetptlsymlpklheeamalpse
    

    Sequence, based on observed residues (ATOM records):
    >2vmkC (C:)
    mkrmlinatqqlrvalvdgqrlydldiespgkkaniykgkitriepsleaafvdygaerh
    gflplkeiareyfrpnikdvlregqevivqidkeergnkgaalttfislagsylvlmpnn
    praggisrtelkealaslelpegmglivrtagvgksaealqwdlsfrlkhweaikkaaes
    rpapflihqesnvivrafrdylrqdigeilidnpkvlelarqhiaalgrpdfsskiklyt
    geiplfshyqiesqiesafqrevrlpsggsividstealtaidinsagdieetafntnle
    aadeiarqlrlrdlgglividfidmtpvrhqravenrlreavrqdrariqishisrfgll
    emsrqrlshhvcprcsgtgtvrdneslslsilrlieeealkentqevhaivpvpiasyll
    nekrsavnaietrqdgvrcvivpndqmetphyhvlrvrkgeetptlsymlpklh
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vmkD (D:)
    mkrmlinatqqeelrvalvdgqrlydldiespgheqkkaniykgkitriepsleaafvdy
    gaerhgflplkeiareyfpanysahgrpnikdvlregqevivqidkeergnkgaalttfi
    slagsylvlmpnnpraggisrriegddrtelkealaslelpegmglivrtagvgksaeal
    qwdlsfrlkhweaikkaaesrpapflihqesnvivrafrdylrqdigeilidnpkvlela
    rqhiaalgrpdfsskiklytgeiplfshyqiesqiesafqrevrlpsggsividstealt
    aidinsaratrggdieetafntnleaadeiarqlrlrdlgglividfidmtpvrhqrave
    nrlreavrqdrariqishisrfgllemsrqrlspslgesshhvcprcsgtgtvrdnesls
    lsilrlieeealkentqevhaivpvpiasyllnekrsavnaietrqdgvrcvivpndqme
    tphyhvlrvrkgeetptlsymlpklheeamalpse
    

    Sequence, based on observed residues (ATOM records):
    >2vmkD (D:)
    mkrmlinatlrvalvdgqrlydldiqkkaniykgkitriepsleaafvdaerhgflplke
    iareyfprpnikdvlregqevivqidkeeralttfislagsylvlmpnnpraggddrtel
    kealaslelpegmglivrtasaealqwdlsfrlkhweaikkaaesrpapflihqesnviv
    rafrdylrqdigeilidnpkvlelarqhiaalgrpdfsskiklytgeiplfshyqiesqi
    esafqrevrlpsggsividstealtaidinsadieetafntnleaadeiarqlrlrdlgg
    lividfidmtpvrhqravenrlreavrqdrariqishisrfgllemsrqrlslgesshhv
    cprcsgtgtvrdneslslsilrlieeealkentqevhaivpvpiasyllnekrsavnaie
    trqdgvrcvivpndqmetphyhvlrvrkgeetptlsymlpklheeamalpse