PDB entry 2vld

View 2vld on RCSB PDB site
Description: crystal structure of a repair endonuclease from pyrococcus abyssi
Deposited on 2008-01-14, released 2009-05-19
The last revision was dated 2018-09-26, with a file datestamp of 2018-09-21.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Endonuclease NucS
    Species: Pyrococcus abyssi [TaxId:29292]
    Gene: nucS, PYRAB01260, PAB2263
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9V2E8 (1-End)
      • initiating methionine (0)
      • engineered mutation (88)
      • engineered mutation (187)
  • Chain 'B':
    Compound: Endonuclease NucS
    Species: Pyrococcus abyssi [TaxId:29292]
    Gene: nucS, PYRAB01260, PAB2263
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9V2E8
      • engineered mutation (88)
      • engineered mutation (187)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vldA (A:)
    mrkviikenpseeeikelldlaekhggvvtifarckvhyegrakselgegdriiiikpdg
    sflihqnkkrepvnwqppgskvtfkensmisirrrpyerleveiiepyslvvflaedyee
    laltgseaemanlifenprvieegfkpiyrekpirhgivdvmgvdkdgnivvlelkrrka
    dlhavsqmkryvdslkeeygenvrgilvapsltegakkllekeglefrkleppkkgnekr
    skqktldfftp
    

    Sequence, based on observed residues (ATOM records):
    >2vldA (A:)
    mrkviikenpseeeikelldlaekhggvvtifarckvhyegrakselgegdriiiikpdg
    sflihqnkkrepvnwqppgskvtfkensmisirrrpyerleveiiepyslvvflaedyee
    seaemanlifenprvieegfkpiyrekpirhgivdvmgvdkdgnivvlelkrrkadlhav
    sqmkryvdslkeeygenvrgilvapsltegakkllekeglefrklepp
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vldB (B:)
    mrkviikenpseeeikelldlaekhggvvtifarckvhyegrakselgegdriiiikpdg
    sflihqnkkrepvnwqppgskvtfkensmisirrrpyerleveiiepyslvvflaedyee
    laltgseaemanlifenprvieegfkpiyrekpirhgivdvmgvdkdgnivvlelkrrka
    dlhavsqmkryvdslkeeygenvrgilvapsltegakkllekeglefrkleppkkgnekr
    skqktldfftp
    

    Sequence, based on observed residues (ATOM records):
    >2vldB (B:)
    kviikenpseeeikelldlaekhggvvtifarckvhyegrakselgegdriiiikpdgsf
    lihqnkkrepvnwqppgskvtfkensmisirrrpyerleveiiepyslvvflaedyeese
    aemanlifenprvieegfkpiyrekpirhgivdvmgvdkdgnivvlelkrrkadlhavsq
    mkryvdslkeeygenvrgilvapsltegakkllekeglefrklepp