PDB entry 2vla

View 2vla on RCSB PDB site
Description: crystal structure of restriction endonuclease bpuji recognition domain in complex with cognate dna
Deposited on 2008-01-11, released 2008-05-06
The last revision was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: N/A
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: restriction endonuclease r.bpuji
    Species: BACILLUS PUMILUS [TaxId:1408]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 5'-d(*gp*gp*tp*ap*cp*cp*cp*gp*tp*gp *gp*a)-3'
  • Chain 'M':
    Compound: 5'-d(*tp*cp*cp*ap*cp*gp*gp*gp*tp*ap *cp*c)-3'
  • Heterogens: PG6, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vlaA (A:)
    mnynpeeqfrctiirgkaknmldnllpayaniiddicpcdkasfvkdfnnrlieilgeet
    tkktldnhrteiagklfgmfyeddevifpsgrtnkyiedsdqpaffkdicfkfqfpngmd
    kldkviekvgakiqirqfpyilqvlltadnnniqlskddiayyvlnslqvlqgkikpiev
    iekiiedrsnditkkvrhpgketsysmqhireqlnylelanliridgnlvklnyreaeni
    nyiaqfwgnkpefnaykydftseddkksffkdwqqyysnvnshks
    

    Sequence, based on observed residues (ATOM records):
    >2vlaA (A:)
    mnynpeeqfrctiirgkaknmldnllpayaniiddicpcdkasfvkdfnnrlieilgeet
    tkktldnhrteiagklfgmfyeddevifpsgrtnkyiedsdqpaffkdicfkfqfpngmd
    kldkviekvgakiqirqfpyilqvlltadnnniqlskddiayyvlnslqvlqgkikpiev
    iekiiedrsnditkkvrhpgketsysmqhireqlnylelanliridgnlvklnyreaeni
    nyiaqfwgnkpefnaykydftseddkksffkdwqqyysnv
    

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.