PDB entry 2vl5

View 2vl5 on RCSB PDB site
Description: Structure of anti-collagen type II FAb CIIC1
Class: immune system
Keywords: rheumatoid factor, immune system, arthritis, autoantibodies, collagen type II
Deposited on 2008-01-08, released 2008-03-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ciic1 anticollagen fab
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VL5 (0-217)
    Domains in SCOPe 2.08: d2vl5a1, d2vl5a2
  • Chain 'B':
    Compound: ciic1 anticollagen fab
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VL5 (0-End)
    Domains in SCOPe 2.08: d2vl5b1, d2vl5b2
  • Chain 'C':
    Compound: ciic1 anticollagen fab
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VL5 (0-217)
    Domains in SCOPe 2.08: d2vl5c1, d2vl5c2
  • Chain 'D':
    Compound: ciic1 anticollagen fab
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VL5 (0-End)
    Domains in SCOPe 2.08: d2vl5d1, d2vl5d2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2vl5A (A:)
qvqlqqpgadlvrpgvsvklsckasgytftsywmnwvkqrpgqglewigmihpsdsetrl
sqkfkdkatltvdkssstaymqlssptsedsavyycarlkpggtwfaywgqgtlvtvsaa
kttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdl
ytlsssvtvtsstwpsqsitcnvahpasstkvdkkiep

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vl5B (B:)
divltqspasltvslgqratiscrasksvdsygnsfmewyqqkpgqppklliyrasnles
giparfsgsgsrtdftltinpveaddvatyycqqsnedpytfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >2vl5B (B:)
divltqspasltvslgqratiscrasksvdsygnsfmewyqqkpgqppklliyrasnles
giparfsgsgsrtdftltinpveaddvatyycqqsnedpytfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2vl5C (C:)
qvqlqqpgadlvrpgvsvklsckasgytftsywmnwvkqrpgqglewigmihpsdsetrl
sqkfkdkatltvdkssstaymqlssptsedsavyycarlkpggtwfaywgqgtlvtvsaa
kttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdl
ytlsssvtvtsstwpsqsitcnvahpasstkvdkkiep

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2vl5D (D:)
divltqspasltvslgqratiscrasksvdsygnsfmewyqqkpgqppklliyrasnles
giparfsgsgsrtdftltinpveaddvatyycqqsnedpytfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >2vl5D (D:)
divltqspasltvslgqratiscrasksvdsygnsfmewyqqkpgqppklliyrasnles
giparfsgsgsrtdftltinpveaddvatyycqqsnedpytfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrn