PDB entry 2vju

View 2vju on RCSB PDB site
Description: crystal structure of the is608 transposase in complex with the complete right end 35-mer DNA and manganese
Class: DNA-binding protein
Keywords: protein-DNA complex, DNA-binding protein, huh motif, DNA stem loop, transposition
Deposited on 2007-12-13, released 2008-02-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.186
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: transposase orfa
    Species: HELICOBACTER PYLORI [TaxId:210]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vjua1
  • Chain 'B':
    Compound: transposase orfa
    Species: HELICOBACTER PYLORI [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VJU (Start-2)
    • Uniprot Q933Z0 (5-End)
    Domains in SCOPe 2.08: d2vjub1, d2vjub2
  • Chain 'C':
    Compound: right end 35-mer
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'D':
    Compound: right end 35-mer
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Heterogens: MN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vjuA (A:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records): (download) 
    >2vjuA (A:)
avlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkd
hihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnv
vkqyienqq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vjuB (B:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records): (download) 
    >2vjuB (B:)
samasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiie
mqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvg
gaplnvvkqyienqq

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.