PDB entry 2vjg
View 2vjg on RCSB PDB site
Description: crystal structure of the major carrot allergen dau c 1
Class: allergen
Keywords: major carrot allergen, pathogenesis-related protein, dau c 1, allergen, plant defense
Deposited on
2007-12-10, released
2008-12-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-09-01, with a file datestamp of
2009-08-28.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.188
AEROSPACI score: 0.33
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: major allergen dau c 1
Species: DAUCUS CAROTA [TaxId:4039]
Database cross-references and differences (RAF-indexed):
- Uniprot O04298 (Start-153)
- variant (35)
- variant (65)
- variant (79)
- variant (101)
Domains in SCOPe 2.08: d2vjga_ - Chain 'B':
Compound: major allergen dau c 1
Species: DAUCUS CAROTA [TaxId:4039]
Database cross-references and differences (RAF-indexed):
- Uniprot O04298 (Start-153)
- variant (35)
- variant (65)
- variant (79)
- variant (101)
Domains in SCOPe 2.08: d2vjgb_ - Chain 'C':
Compound: major allergen dau c 1
Species: DAUCUS CAROTA [TaxId:4039]
Database cross-references and differences (RAF-indexed):
- Uniprot O04298 (Start-153)
- variant (35)
- variant (65)
- variant (79)
- variant (101)
Domains in SCOPe 2.08: d2vjgc_ - Chain 'D':
Compound: major allergen dau c 1
Species: DAUCUS CAROTA [TaxId:4039]
Database cross-references and differences (RAF-indexed):
- Uniprot O04298 (Start-153)
- variant (35)
- variant (65)
- variant (79)
- variant (101)
Domains in SCOPe 2.08: d2vjgd_ - Heterogens: P4C, PEG, PGE, EDO, PG4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2vjgA (A:)
mgaqshsleitssvsaekifsgivldvdtvipkaatgayksvevkgdggagtvriitlpe
gspittmtvrtdavnkealsydstvidgdillgfiesiethmvvvptadggsitkttaif
htkgdavvpeenikfadaqntalfkaieaylian
Sequence, based on observed residues (ATOM records): (download)
>2vjgA (A:)
aqshsleitssvsaekifsgivldvdtvipkaatgayksvevkgdggagtvriitlpegs
pittmtvrtdavnkealsydstvidgdillgfiesiethmvvvptadggsitkttaifht
kgdavvpeenikfadaqntalfkaieaylian
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2vjgB (B:)
mgaqshsleitssvsaekifsgivldvdtvipkaatgayksvevkgdggagtvriitlpe
gspittmtvrtdavnkealsydstvidgdillgfiesiethmvvvptadggsitkttaif
htkgdavvpeenikfadaqntalfkaieaylian
Sequence, based on observed residues (ATOM records): (download)
>2vjgB (B:)
aqshsleitssvsaekifsgivldvdtvipkaatgayksvevkgdggagtvriitlpegs
pittmtvrtdavnkealsydstvidgdillgfiesiethmvvvptadggsitkttaifht
kgdavvpeenikfadaqntalfkaieaylian
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2vjgC (C:)
mgaqshsleitssvsaekifsgivldvdtvipkaatgayksvevkgdggagtvriitlpe
gspittmtvrtdavnkealsydstvidgdillgfiesiethmvvvptadggsitkttaif
htkgdavvpeenikfadaqntalfkaieaylian
Sequence, based on observed residues (ATOM records): (download)
>2vjgC (C:)
aqshsleitssvsaekifsgivldvdtvipkaatgayksvevkgdggagtvriitlpegs
pittmtvrtdavnkealsydstvidgdillgfiesiethmvvvptadggsitkttaifht
kgdavvpeenikfadaqntalfkaieaylian
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2vjgD (D:)
mgaqshsleitssvsaekifsgivldvdtvipkaatgayksvevkgdggagtvriitlpe
gspittmtvrtdavnkealsydstvidgdillgfiesiethmvvvptadggsitkttaif
htkgdavvpeenikfadaqntalfkaieaylian
Sequence, based on observed residues (ATOM records): (download)
>2vjgD (D:)
aqshsleitssvsaekifsgivldvdtvipkaatgayksvevkgdggagtvriitlpegs
pittmtvrtdavnkealsydstvidgdillgfiesiethmvvvptadggsitkttaifht
kgdavvpeenikfadaqntalfkaieaylian