PDB entry 2vic

View 2vic on RCSB PDB site
Description: crystal structure of the ishp608 transposase in complex with left end 26-mer DNA and manganese
Class: DNA-binding protein
Keywords: DNA-binding protein, protein-DNA complex, huh motif, DNA stem loop, transposition
Deposited on 2007-11-29, released 2008-02-19
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.203
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: transposase orfa
    Species: HELICOBACTER PYLORI [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VIC (19-44)
    • Uniprot Q933Z0 (Start-158)
    Domains in SCOPe 2.01: d2vica1
  • Chain 'B':
    Compound: transposase orfa
    Species: HELICOBACTER PYLORI [TaxId:210]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VIC (19-44)
    • Uniprot Q933Z0
    Domains in SCOPe 2.01: d2vicb1
  • Chain 'C':
    Compound: 5'-d(*ap*ap*ap*gp*cp*cp*cp*cp*tp*ap *gp*cp*tp*tp*tp*tp*ap*gp*cp*tp*ap*tp*gp*gp*gp*g)-3'
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'D':
    Compound: 5'-d(*ap*ap*ap*gp*cp*cp*cp*cp*tp*ap *gp*cp*tp*tp*tp*tp*ap*gp*cp*tp*ap*tp*gp*gp*gp*g)-3'
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Heterogens: MN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vicA (A:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records): (download) 
    >2vicA (A:)
vlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdh
ihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvv
kqyienqqnsnrpkqkekwksyvdnlqtkal

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vicB (B:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records): (download) 
    >2vicB (B:)
vlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdh
ihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvv
kqyienqq

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.