PDB entry 2vi5

View 2vi5 on RCSB PDB site
Description: lumazine synthase from mycobacterium tuberculosis bound to n-6- (ribitylamino)pyrimidine-2,4(1h,3h)-dione-5-yl-propionamide
Deposited on 2007-11-27, released 2008-04-08
The last revision was dated 2019-04-10, with a file datestamp of 2019-04-05.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 6,7-dimethyl-8-ribityllumazine synthase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: Y19, K, PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vi5A (A:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5A (A:)
psldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqela
rnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldrag
lptsaedkgaqatvaalataltlrelrahs

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vi5B (B:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5B (B:)
dasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqelarnh
davvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldraglpt
saedkgaqatvaalataltlrelrahs

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vi5C (C:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5C (C:)
asgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqelarnhd
avvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldraglpts
aedkgaqatvaalataltlrelrahs

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vi5D (D:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5D (D:)
ldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqelarn
hdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldraglp
tsaedkgaqatvaalataltlrelrahs

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2vi5E (E:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5E (E:)
lpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqel
arnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldra
glptsaedkgaqatvaalataltlrelrahs

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2vi5F (F:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5F (F:)
dasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqelarnh
davvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldraglpt
saedkgaqatvaalataltlrelrahs

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2vi5G (G:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5G (G:)
dasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqelarnh
davvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldraglpt
saedkgaqatvaalataltlrelrahs

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2vi5H (H:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5H (H:)
ldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqelarn
hdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldraglp
tsaedkgaqatvaalataltlrelrahs

  • Chain 'I':
    Sequence, based on SEQRES records:
    >2vi5I (I:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5I (I:)
psldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqela
rnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldrag
lptsaedkgaqatvaalataltlrelrahs

  • Chain 'J':
    Sequence, based on SEQRES records:
    >2vi5J (J:)
mkggagvpdlpsldasgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgai
eipvvaqelarnhdavvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttn
teeqaldraglptsaedkgaqatvaalataltlrelrahs

    Sequence, based on observed residues (ATOM records):
    >2vi5J (J:)
asgvrlaivasswhgkicdalldgarkvaagcglddptvvrvlgaieipvvaqelarnhd
avvalgvvirgqtphfdyvcdavtqgltrvsldsstpiangvlttnteeqaldraglpts
aedkgaqatvaalataltlrelrahs