PDB entry 2vhg

View 2vhg on RCSB PDB site
Description: crystal structure of the ishp608 transposase in complex with right end 31-mer DNA
Class: DNA-binding protein
Keywords: huh motif, DNA stem loop, transposition, protein-DNA comlpex, DNA-binding protein
Deposited on 2007-11-21, released 2008-02-19
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.2847
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: transposase orfa
    Species: HELICOBACTER PYLORI [TaxId:210]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2vhga1
  • Chain 'B':
    Compound: transposase orfa
    Species: HELICOBACTER PYLORI [TaxId:210]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2vhgb1
  • Chain 'C':
    Compound: right end 31-mer
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'D':
    Compound: right end 31-mer
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Heterogens: MN

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vhgA (A:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records): (download) 
    >2vhgA (A:)
lyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhi
hiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvk
qyienq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vhgB (B:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records): (download) 
    >2vhgB (B:)
lyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhi
hiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvk
qyienqq

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.