PDB entry 2vhg
View 2vhg on RCSB PDB site
Description: crystal structure of the ishp608 transposase in complex with right end 31-mer DNA
Class: DNA-binding protein
Keywords: huh motif, DNA stem loop, transposition, protein-DNA comlpex, DNA-binding protein
Deposited on
2007-11-21, released
2008-02-19
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.2847
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: transposase orfa
Species: HELICOBACTER PYLORI [TaxId:210]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2vhga1 - Chain 'B':
Compound: transposase orfa
Species: HELICOBACTER PYLORI [TaxId:210]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2vhgb1 - Chain 'C':
Compound: right end 31-mer
Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
- Chain 'D':
Compound: right end 31-mer
Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
- Heterogens: MN
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2vhgA (A:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal
Sequence, based on observed residues (ATOM records): (download)
>2vhgA (A:)
lyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhi
hiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvk
qyienq
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2vhgB (B:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal
Sequence, based on observed residues (ATOM records): (download)
>2vhgB (B:)
lyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhi
hiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvk
qyienqq
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.