PDB entry 2vgm
View 2vgm on RCSB PDB site
Description: structure of yeast dom34 : a protein related to translation termination factor erf1 and involved in no-go decay.
Class: cell cycle
Keywords: translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation, nucleotide binding, mitosis, meiosis, cytoplasm, cell cycle, no-go decay
Deposited on
2007-11-14, released
2008-01-22
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.226
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: dom34
Species: Saccharomyces cerevisiae [TaxId:4932]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2vgma1, d2vgma2, d2vgma3 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2vgmA (A:)
mkvislkkdsfnkggavitllpedkedlftvyqivdkddelifkkkftskldeagkkkst
dlvklkikvisedfdmkdeylkykgvtvtdesgasnvdipvgkylsftldyvypftiikq
nfnkfmqkllneacnieyksdtaavvlqegiahvclvtssstilkqkieysmpkkkrttd
vlkfdektekfykaiysamkkdlnfdklktiilcspgfyakilmdkifqyaeeehnkkil
dnkgmffiahcstgylqginevlknplyasklqdtkyskeimvmdefllhlnkdddkawy
gekevvkaaeygaisyllltdkvlhsdniaqreeylklmdsvesnggkalvlstlhslge
eldqltgiacilkyplpdldeddgee
Sequence, based on observed residues (ATOM records): (download)
>2vgmA (A:)
mkvislkggavitllpedkedlftvyqivdkddelifkkkftdlvklkikvisedfdmkd
eylkykgvtvtdesgasnvdipvgkylsftldyvypftiikqnfnkfmqkllneacniey
ksdtaavvlqegiahvclvtssstilkqkietdvlkfdektekfykaiysamkkdlnfdk
lktiilcspgfyakilmdkifqyaeeehnkkildnkgmffiahcstgylqginevlknpl
yasklqdtkyskeimvmdefllhlnkdddkawygekevvkaaeygaisyllltdkvlhsd
niaqreeylklmdsvesnggkalvlstlhslgeeldqltgiacilkyplpdlde