PDB entry 2vgm

View 2vgm on RCSB PDB site
Description: Structure of S. cerevisiae Dom34, a translation termination-like factor involved in RNA quality control pathways and interacting with Hbs1 (Unlabeled protein)
Class: cell cycle
Keywords: translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation, nucleotide binding, mitosis, meiosis, cytoplasm, cell cycle, no-go decay
Deposited on 2007-11-14, released 2008-01-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-17, with a file datestamp of 2021-03-12.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dom34
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vgma1, d2vgma2, d2vgma3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vgmA (A:)
mkvislkkdsfnkggavitllpedkedlftvyqivdkddelifkkkftskldeagkkkst
dlvklkikvisedfdmkdeylkykgvtvtdesgasnvdipvgkylsftldyvypftiikq
nfnkfmqkllneacnieyksdtaavvlqegiahvclvtssstilkqkieysmpkkkrttd
vlkfdektekfykaiysamkkdlnfdklktiilcspgfyakilmdkifqyaeeehnkkil
dnkgmffiahcstgylqginevlknplyasklqdtkyskeimvmdefllhlnkdddkawy
gekevvkaaeygaisyllltdkvlhsdniaqreeylklmdsvesnggkalvlstlhslge
eldqltgiacilkyplpdldeddgee

    Sequence, based on observed residues (ATOM records): (download) 
    >2vgmA (A:)
mkvislkggavitllpedkedlftvyqivdkddelifkkkftdlvklkikvisedfdmkd
eylkykgvtvtdesgasnvdipvgkylsftldyvypftiikqnfnkfmqkllneacniey
ksdtaavvlqegiahvclvtssstilkqkietdvlkfdektekfykaiysamkkdlnfdk
lktiilcspgfyakilmdkifqyaeeehnkkildnkgmffiahcstgylqginevlknpl
yasklqdtkyskeimvmdefllhlnkdddkawygekevvkaaeygaisyllltdkvlhsd
niaqreeylklmdsvesnggkalvlstlhslgeeldqltgiacilkyplpdlde