PDB entry 2vfz

View 2vfz on RCSB PDB site
Description: crystal structure of alpha-1,3 galactosyltransferase (r365k) in complex with udp-2f-galactose
Class: transferase
Keywords: 3 galactosyltransferase, manganese, transferase, glycoprotein, metal-binding, gt, r365k, alpha-1, membrane, alpha gt, galactose, enzyme mechanism, glycosyltransferase, galactosyltransferase, substrate specificity, signal-anchor, transmembrane, golgi apparatus
Deposited on 2007-11-06, released 2007-11-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.178
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: n-acetyllactosaminide alpha-1,3-galactosyl transferase
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vfza_
  • Chain 'B':
    Compound: n-acetyllactosaminide alpha-1,3-galactosyl transferase
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vfzb_
  • Heterogens: UPF, MN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2vfzA (A:)
    esklklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgry
    iehyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdis
    mmrmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndft
    yerrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdesh
    lnkyfllnkptkilspeycwdyhiglpadiklvkmswqtkeynvvknnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfzA (A:)
    klklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgryie
    hyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdismm
    rmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndftye
    rrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdeshln
    kyfllnkptkilspeycwdyhiglpadiklvkmswqtk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2vfzB (B:)
    esklklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgry
    iehyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdis
    mmrmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndft
    yerrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdesh
    lnkyfllnkptkilspeycwdyhiglpadiklvkmswqtkeynvvknnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfzB (B:)
    lklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgryieh
    yleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdismmr
    mktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndftyer
    rkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdeshlnk
    yfllnkptkilspeycwdyhiglpadiklvkmswqtkeynv