PDB entry 2vfz
View 2vfz on RCSB PDB site
Description: crystal structure of alpha-1,3 galactosyltransferase (r365k) in complex with udp-2f-galactose
Class: transferase
Keywords: 3 galactosyltransferase, manganese, transferase, glycoprotein, metal-binding, gt, r365k, alpha-1, membrane, alpha gt, galactose, enzyme mechanism, glycosyltransferase, galactosyltransferase, substrate specificity, signal-anchor, transmembrane, golgi apparatus
Deposited on
2007-11-06, released
2007-11-13
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.178
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: n-acetyllactosaminide alpha-1,3-galactosyl transferase
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2vfza_ - Chain 'B':
Compound: n-acetyllactosaminide alpha-1,3-galactosyl transferase
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2vfzb_ - Heterogens: UPF, MN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2vfzA (A:)
esklklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgry
iehyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdis
mmrmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndft
yerrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdesh
lnkyfllnkptkilspeycwdyhiglpadiklvkmswqtkeynvvknnv
Sequence, based on observed residues (ATOM records): (download)
>2vfzA (A:)
klklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgryie
hyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdismm
rmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndftye
rrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdeshln
kyfllnkptkilspeycwdyhiglpadiklvkmswqtk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2vfzB (B:)
esklklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgry
iehyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdis
mmrmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndft
yerrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdesh
lnkyfllnkptkilspeycwdyhiglpadiklvkmswqtkeynvvknnv
Sequence, based on observed residues (ATOM records): (download)
>2vfzB (B:)
lklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgryieh
yleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdismmr
mktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndftyer
rkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdeshlnk
yfllnkptkilspeycwdyhiglpadiklvkmswqtkeynv