PDB entry 2vfx

View 2vfx on RCSB PDB site
Description: Structure of the Symmetric Mad2 Dimer
Class: cell cycle
Keywords: mad2, mad1, cdc2, nucleus, mitosis, anaphase, cell cycle, cell division, spindle checkpoint, anaphase-promoting complex
Deposited on 2007-11-05, released 2008-03-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxa_
  • Chain 'B':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxb_
  • Chain 'C':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxc_
  • Chain 'D':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxd_
  • Chain 'E':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxe_
  • Chain 'F':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxf_
  • Chain 'G':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxg_
  • Chain 'H':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxh_
  • Chain 'I':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxi_
  • Chain 'J':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxj_
  • Chain 'K':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxk_
  • Chain 'L':
    Compound: mitotic spindle assembly checkpoint protein mad2a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VFX (0-0)
      • engineered mutation (13)
      • engineered mutation (79)
      • engineered mutation (106)
    • Uniprot Q13257 (1-205)
    Domains in SCOPe 2.08: d2vfxl_
  • Heterogens: MG, CL, PE4, PE3, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2vfxA (A:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxA (A:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktasapreksqk
    aiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnseevr
    lrsftttihkvnsmvaykipvnd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2vfxB (B:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxB (B:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktasapreksqk
    aiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnseevr
    lrsftttihkvnsmvaykipvnd
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2vfxC (C:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxC (C:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktasapreksqk
    aiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnseevr
    lrsftttihkvnsmvaykipvnd
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2vfxD (D:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxD (D:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktaapreksqka
    iqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnseevrl
    rsftttihkvnsmvaykipvnd
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2vfxE (E:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2vfxF (F:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxF (F:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktasapreksqk
    aiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnseevr
    lrsftttihkvnsmvaykipvnd
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2vfxG (G:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxG (G:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakapreksqk
    aiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnseevr
    lrsftttihkvnsmvaykipvnd
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2vfxH (H:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxH (H:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktasapreksqk
    aiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnseevr
    lrsftttihkvnsmvaykipvnd
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >2vfxI (I:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxI (I:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktaapreksqka
    iqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnseevrl
    rsftttihkvnsmvaykipvnd
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >2vfxJ (J:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxJ (J:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktaapreksqka
    iqdeirsvirqitatvtflpllevscsfdlliytddlvvpekweesgpqfitnseevrlr
    sftttihkvnsmvaykipvnd
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2vfxK (K:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >2vfxL (L:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakddsaprek
    sqkaiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnse
    evrlrsftttihkvnsmvaykipvnd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vfxL (L:)
    gmalqlsreqgitargsaeivaeffsfginsilyqrgiypsetftrvqkygltllvttdl
    elikylnnvveqlkdwlykssvqklvvvisniesgevlerwqfdiesdktakapreksqk
    aiqdeirsvirqitatvtflpllevscsfdlliytdkdlvvpekweesgpqfitnseevr
    lrsftttihkvnsmvaykipvnd