PDB entry 2vfj

View 2vfj on RCSB PDB site
Description: structure of the a20 ovarian tumour (otu) domain
Deposited on 2007-11-04, released 2007-12-04
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.2064
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tumor necrosis factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Tumor necrosis factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Tumor necrosis factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Tumor necrosis factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vfjA (A:)
maeqvlpqalylsnmrkavkirertpedifkptngiihhfktmhrytlemfrtcqfcpqf
reiihkalidrniqatlesqkklnwcrevrklvalktngdgnclmhatsqymwgvqdtdl
vlrkalfstlketdtrnfkfrwqleslksqefvetglcydtrnwndewdnlikmastdtp
marsglqynsleeihifvlcnilrrpiivisdkmlrslesgsnfaplkvggiylplhwpa
qecyrypivlgydshhfvplvtlkdsgpeiravplvnrdrgrfedlkvhfltdpenemke
kllkeylmvieipvqgwdhgtthlinaakldeanlpkeinlvddyfelvqheykkwqens
eqgrre

    Sequence, based on observed residues (ATOM records):
    >2vfjA (A:)
vlpqalylsnmrkavkirertpedifkptngiihhfktmhrytlemfrtcqfcpqfreii
hkalidrniqatlesqkklnwcrevrklvalktngdgnclmhatsqymwgvqdtdlvlrk
alfstlketdtrnfkfrwqleslksqernwndewdnlikmastdtpmaglqynsleeihi
fvlcnilrrpiivisdkvggiylplhwpaqecyrypivlgydshhfvplvtlkdsgpeir
avplvnrdrgrfedlkvhfltdpenemkekllkeylmvieipvqgwdhgtthlinaakld
eanlpkeinlvddyfelvqheykkwqense

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vfjB (B:)
maeqvlpqalylsnmrkavkirertpedifkptngiihhfktmhrytlemfrtcqfcpqf
reiihkalidrniqatlesqkklnwcrevrklvalktngdgnclmhatsqymwgvqdtdl
vlrkalfstlketdtrnfkfrwqleslksqefvetglcydtrnwndewdnlikmastdtp
marsglqynsleeihifvlcnilrrpiivisdkmlrslesgsnfaplkvggiylplhwpa
qecyrypivlgydshhfvplvtlkdsgpeiravplvnrdrgrfedlkvhfltdpenemke
kllkeylmvieipvqgwdhgtthlinaakldeanlpkeinlvddyfelvqheykkwqens
eqgrre

    Sequence, based on observed residues (ATOM records):
    >2vfjB (B:)
lpqalylsnmrkavkirertpedifkptngiihhfktmhrytlemfrtcqfcpqfreiih
kalidrniqatlesqkklnwcrevrklvalktngdgnclmhatsqymwgvqdtdlvlrka
lfstlketdtrnfkfrwqleslksqernwndewdnlikmastdtpqynsleeihifvlcn
ilrrpiivisdkvggiylplhwpaqecyrypivlgydshhfvplvtlkpeiravplvnrd
rgrfedlkvhfltdpenemkekllkeylmvieipvqgwhlinaakldeanlpkeinlvdd
yfelvqheykkwqense

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vfjC (C:)
maeqvlpqalylsnmrkavkirertpedifkptngiihhfktmhrytlemfrtcqfcpqf
reiihkalidrniqatlesqkklnwcrevrklvalktngdgnclmhatsqymwgvqdtdl
vlrkalfstlketdtrnfkfrwqleslksqefvetglcydtrnwndewdnlikmastdtp
marsglqynsleeihifvlcnilrrpiivisdkmlrslesgsnfaplkvggiylplhwpa
qecyrypivlgydshhfvplvtlkdsgpeiravplvnrdrgrfedlkvhfltdpenemke
kllkeylmvieipvqgwdhgtthlinaakldeanlpkeinlvddyfelvqheykkwqens
eqgrre

    Sequence, based on observed residues (ATOM records):
    >2vfjC (C:)
vlpqalylsnmrkavkirertpedifkptngiihhfktmhrytlemfrtcqfcpqfreii
hkalidrniqatlesqkklnwcrevrklvalktngdgnclmhatsqymwgvqdtdlvlrk
alfstlketdtrnfkfrwqleslksqernwndewdnlikmastdtpmarsglqynsleei
hifvlcnilrrpiivisdkvggiylplhwpaqecyrypivlgydshhfvplvtlkdsgpe
iravplvnrdrgrfedlkvhfltdpenemkekllkeylmvieipvqhgtthlinaaklde
anlpkeinlvddyfelvqheykkwqen

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vfjD (D:)
maeqvlpqalylsnmrkavkirertpedifkptngiihhfktmhrytlemfrtcqfcpqf
reiihkalidrniqatlesqkklnwcrevrklvalktngdgnclmhatsqymwgvqdtdl
vlrkalfstlketdtrnfkfrwqleslksqefvetglcydtrnwndewdnlikmastdtp
marsglqynsleeihifvlcnilrrpiivisdkmlrslesgsnfaplkvggiylplhwpa
qecyrypivlgydshhfvplvtlkdsgpeiravplvnrdrgrfedlkvhfltdpenemke
kllkeylmvieipvqgwdhgtthlinaakldeanlpkeinlvddyfelvqheykkwqens
eqgrre

    Sequence, based on observed residues (ATOM records):
    >2vfjD (D:)
vlpqalylsnmrkavkirertpedifkptngiihhfktmhrytlemfrtcqfcpqfreii
hkalidrniqatlesqkklnwcrevrklvalktngdgnclmhatsqymwgvqdtdlvlrk
alfstlketdtrnfkfrwqleslksqernwndewdnlikmastdtpmaqynsleeihifv
lcnilrrpiivisdkmkvggiylplhwpaqecyrypivlgydshhfvplvtlkdsgpeir
avplvnrdrgrfedlkvhfltdpenemkekllkeylmvieipvqgwdhgthlinaaklde
anlpkeinlvddyfelvqheykkwqense